Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis JJ

Subject, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  283 bits (725), Expect = 2e-80
 Identities = 186/566 (32%), Positives = 301/566 (53%), Gaps = 46/566 (8%)

Query: 394 EYVVSTEVKFELETTVNQVADAE--------VLEKEKSLETLAKFKINIKIDEECLLKAV 445
           E + +T  K E+  T   V+DA           E +  L    + +     DE    K +
Sbjct: 138 EAIPATPTKTEITQTAVVVSDASHQDDIGFGFFEDDVELTLAIENQDFGFFDEAFTAKEI 197

Query: 446 RAYMVIKDLKEKGNVLETEPPE-------EKIQEGNLGGNTVTIYYDSDESEDDIKEIIS 498
               + K L +   V  TEP +       E +   ++      + +          E +S
Sbjct: 198 SVEDINKTLLDSQLVTNTEPDDDLGFGFFESLTPESVDSEINALVHIQANKAIAAIEPLS 257

Query: 499 KTPEITEFLVNVQKNTNNSKDNTKI--------------------KNTVDATSKKQAENS 538
           K P  +  +  + + T N+ ++TK+                    K+T  A +KK    +
Sbjct: 258 K-PVNSPSVPKIPRYTGNTAESTKVAPADPVDPSPVLNKSVASGTKSTPTAATKK---GN 313

Query: 539 SSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKY--DLKE-LHNAVGRLNMLATE 595
           +S +  T+RV   K+D L+NL GE+VI ++  T I  +   +L E L  A+  L     E
Sbjct: 314 TSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEISGELGERLKTALVELERNTRE 373

Query: 596 LQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLTH 655
           +QE VM +RM+PV+FVFNRF R VRD +  L K ++  IEG + E+D+ ++++L +PLTH
Sbjct: 374 MQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIEGGNTEIDKGMIEKLVDPLTH 433

Query: 656 LIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPDAMRKKAFE 715
           L+RNSLDHGIE  + R  LGK E   L L A+++   + I + DDG G+  + + +KA E
Sbjct: 434 LVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVIAVHDDGAGLHREKILQKARE 493

Query: 716 KGLYSKEEAEKLTDNEAVNVIFLPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNS 775
             +      + + D +   +IF  GFSTA+ ++DVSGRGVGMDVVR  IE+LGG + ++S
Sbjct: 494 NNM---SVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGMDVVRRNIEALGGRIDIDS 550

Query: 776 EVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAIIY 835
             G+G    + LPLT+AI+  + + + + IY LPL  +++ I    EQ+K L  +  I  
Sbjct: 551 VAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQPHTEQLKYLAQERLIRV 610

Query: 836 RNHILPVIWLKDALNTSGFSD-SDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGIL 894
           R   LP++ L   +  + F+   ++  VV++E N  + G+ +D ++G+ ++V+K L    
Sbjct: 611 REEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCVDALVGQQQVVIKSLEKHY 670

Query: 895 KNINGLAGATILGDGRVALILDLNNI 920
           + I G++GATI+GDG VALILD+ ++
Sbjct: 671 RRIPGVSGATIMGDGSVALILDVESL 696



 Score = 79.0 bits (193), Expect = 1e-18
 Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           +M ++ ++F  E+ EHL+++ Q ++ +     D E + N IFR+AH++KG +   GF  +
Sbjct: 4   NMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEEL-NTIFRAAHSIKGGSGIFGFTAL 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVS 103
           SS+TH ME++LD +R G  +++  I+DLL K +D L  ++S
Sbjct: 63  SSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILS 103