Pairwise Alignments

Query, 441 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC sensor from Marinobacter adhaerens HP15

Subject, 882 a.a., diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (370), Expect = 2e-39
 Identities = 113/377 (29%), Positives = 170/377 (45%), Gaps = 51/377 (13%)

Query: 112 RDVTALRRGDQTRNALYQISEAAHEAETLRDLCDGVHSIIGELFPESDLYLGFNQSHSGR 171
           ++VT  RR +  + +L++I+E ++     +     +H +I  L P ++ Y+   + +   
Sbjct: 227 QEVTERRRAENLQKSLFEIAELSNATIDHQSFYRELHRVISHLLPANNCYIALLEDNGRE 286

Query: 172 LSLPDWRTKSGWIDWQVAP-GSALEDVI--HTRKLSMAVRD-----PAHPGLGVHPKTG- 222
           L  P + ++      Q  P    L + I  H R L +   D      A       P+   
Sbjct: 287 LHFPFYVSQLNVGAPQRRPLADGLTEFILKHKRPLLLDGSDIKALIKAGQLYAKAPQLNY 346

Query: 223 -SEVANWLGVPLVFHESTMGVLVIERGTAAVSFDEADKSLLEFVATQVATVVERKRSEEN 281
              +  W+GVPL       G L I   T + ++ E D  LL FV+  +A  +ERK S E+
Sbjct: 347 AETIHQWIGVPLFIQGIVKGALTIYSFTPSQTYQEKDLDLLTFVSQHIAAAIERKLSAES 406

Query: 282 LRFL---------------------------------------AHHDGLTGLTNRSLFYD 302
           L+                                         A HD LTGL NR++F +
Sbjct: 407 LKQSYEQLEEKVAQRTRALAMLNQDLEKEIAQRRKVEQQLVHDASHDTLTGLPNRAMFME 466

Query: 303 RLETALRSASRN-EGRLALLYLDVNDFKQINDTLGHEAGDELLIEMAQRLRDCTRGTDTV 361
           RL  A++   R+   R ALL++D++ FK INDTLGH  GD  LIE A+RL  C R  DT+
Sbjct: 467 RLAQAVKHVRRHARDRFALLFIDLDRFKLINDTLGHLQGDRFLIETARRLNLCIRSNDTL 526

Query: 362 ARMGGDEFTILLTDVHGRESVENAIAKIREILSLPVAIAGKTVRVCCSIGSAVY-PEDGE 420
            R+GGDEF ILL  ++          +I   LS P  ++ ++     SIG A      G+
Sbjct: 527 GRIGGDEFVILLDSINTNSDAIEVAERILGELSEPYQLSNQSFTSGASIGIAFSGHSSGD 586

Query: 421 TARLLFSKADAAMYASK 437
           T+  L   ADAAMY +K
Sbjct: 587 TSESLLKDADAAMYQAK 603



 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 20/234 (8%)

Query: 118 RRGDQTRNALYQISEAAHEAETLRDLCDGVHSIIGELFPESDLYLGFNQSHSGRLSLPDW 177
           +R +  +N L  IS  A   E   D   G+ + +  L P  + ++      + +L +P +
Sbjct: 32  KRSEIVQNTLLDISNLAARVERAEDFYAGIQTNLNRLLPADNFFIAILNRETNKLGVPFF 91

Query: 178 RTKSGWIDWQVAPGSALEDVIHTRKLSMAVRDPAHPGL------------GVHPKTGSEV 225
             +      Q+ P   L   +++      +R    P L            G     GS  
Sbjct: 92  VDEKDQHPSQLYPSEELSTTLNSGLTGYVLRSQ-QPLLCDDDKFEQLLASGEIVSRGSSC 150

Query: 226 ANWLGVPLVFHESTMGVLVIERGTAAVSFDEADKSLLEFVATQVATVVERKRSEENLRFL 285
             WLG+P+   + T+GV+ ++   A +++ E +  L+ F++  ++ V+ER + + NL   
Sbjct: 151 HQWLGLPIFSSDQTIGVIAVQSYDANITYGEIEVELMTFISQHISGVIERVQYQHNLEAA 210

Query: 286 AHHDGLTGLTNRSLFYDRLETALRSASRNEGRLALLYLDVNDFKQINDTLGHEA 339
             H         S+ YD+L+  +    R E     L+ ++ +    N T+ H++
Sbjct: 211 IEH----RTKELSVAYDKLKQEVTERRRAENLQKSLF-EIAELS--NATIDHQS 257