Pairwise Alignments

Query, 441 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC sensor from Marinobacter adhaerens HP15

Subject, 1251 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  199 bits (506), Expect = 4e-55
 Identities = 146/448 (32%), Positives = 216/448 (48%), Gaps = 21/448 (4%)

Query: 9   YPKLVNLILDTIFVVDESSQIVFVSEACQRLLGYSPSEMIGTPLLNYI-HPEDQERTLAA 67
           Y   ++   D I+  +  +  ++ S  C  +LG +P   +    +  I HPED+ R L  
Sbjct: 488 YDMAISATNDGIWEWELDTNTLYHSPRCLEILGRAPDATLSPMAIAAILHPEDRLRVLTE 547

Query: 68  ARRVMSGHTHTDFEN--RYLHRDGHAVHIL--WSARWSEEDRL-RIAVA-RDVTALRRGD 121
            RR+ +G     FE+  R  H DG    +L   +AR     RL R+A A  D+T  ++GD
Sbjct: 548 VRRI-TGEDAERFEHEFRIRHTDGTWRWVLARGAARRGPGGRLNRVAGALADITDHKQGD 606

Query: 122 QTRNALYQISEAAHEAETLRDLCDGVHSIIGELFPESDLYLGFNQSHSGRLSLPDWRTKS 181
                L+ I+ A +E   L +L   +H+ +       + ++        RL    +  + 
Sbjct: 607 AIAGILFHIANAINETRDLDELFLSIHTALRRHVQAPNFFIALINEPEDRLDFAYFADER 666

Query: 182 G-------WIDWQVAPGSALEDVIHTRKLSMAVRDPAHPGLGVHPKTGSEVANWLGVPLV 234
                    I         LE +   R++ +   D     +   P  GS  A WLG PL 
Sbjct: 667 DARYNPVEHISDPAVQSPTLEVIRTGRQVHLHSDD-----IEARPVFGSRPAAWLGTPLR 721

Query: 235 FHESTMGVLVIERGTAAVSFDEADKSLLEFVATQVATVVERKRSEENLRFLAHHDGLTGL 294
                +G +V++    +  F   D  L+  VA QVA  +ERK+ EE L  LA HD LTGL
Sbjct: 722 SRGKVIGAMVVQHYEDSEFFSARDAELMVPVAEQVAVAIERKQGEEMLTHLALHDPLTGL 781

Query: 295 TNRSLFYDRLETALRSASRNEG-RLALLYLDVNDFKQINDTLGHEAGDELLIEMAQRLRD 353
            NR+L  DR+E A++   RN+  R A+L LD++ FK IND+ GH  GD LL+E+A+R+R 
Sbjct: 782 PNRALLLDRIERAIQRRRRNDSYRFAVLMLDLDRFKFINDSHGHTTGDNLLVEVARRMRP 841

Query: 354 CTRGTDTVARMGGDEFTILLTDVHGRESVENAIAKIREILSLPVAIAGKTVRVCCSIGSA 413
             R  DTVAR+GGDEF +LL DV     +     ++   L  PV +  K VR   SIG  
Sbjct: 842 VVRAGDTVARLGGDEFALLLEDVDSPRRIVQITRRLLAALERPVRMGAKVVRTSASIGMV 901

Query: 414 VYPEDGETARLLFSKADAAMYASKRQSE 441
           +  +  +TA  L   AD AMY +K Q +
Sbjct: 902 LRTQGYDTADALLRDADIAMYQAKAQGK 929



 Score = 32.7 bits (73), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 12  LVNLILDTIFVVDESSQIVFVSEACQRLLGYSPSEMIGTPLLNYIHPEDQER 63
           +++ + D + V+D S +++  + A + + G+S SEM+G     Y  P   ER
Sbjct: 350 IIDFLPDAVLVLDASRRVIAWNRAMEEMTGHSASEMLGRGNFAYALPFYGER 401