Pairwise Alignments

Query, 436 a.a., 23S rRNA 5-methyluridine methyltransferase from Marinobacter adhaerens HP15

Subject, 379 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 7e-27
 Identities = 104/388 (26%), Positives = 174/388 (44%), Gaps = 41/388 (10%)

Query: 68  ADLCGGCSLQHMSGDAQIEFKENTLREHFAHFGGIEPEEWIAPLRSEESLGYRRKARLGV 127
           A+ C  C         Q+  K  TL    A    +  E+W+ P+   ES G+R KA++ V
Sbjct: 8   ANQCLSCRHLKTPLSDQVAAKTATLA---ALLKDLSVEQWLPPVVGPES-GFRNKAKMVV 63

Query: 128 RYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERILPLRNMLHDLEAYSR---IP-- 182
             + A    ++G        ++  D    L P+       ++ +LH LEA+ R   IP  
Sbjct: 64  --LGAAHQPILGLVSPSGEAVSLCD--CSLYPQ------DMQQLLHRLEAFVRQAGIPPY 113

Query: 183 QVEIACGDDVAVMVFRNM------------DELSVGDREKLIAFGQAHELHIYLQPKGPD 230
           +V+ A G+   +++ R+              E ++   E+ +    A    I +      
Sbjct: 114 RVDKAKGELKFILLTRSQVRGEYMLRFVMRSEQAIPRIERELPRLLAEHPEIKVVSVNLQ 173

Query: 231 TVHRIWPESAGRDEERLSYRL---DEFD-LTMRFHPMDFTQVNAGINRAMVHRAVEWLDV 286
            VH    E  G +E  L+      +EF+ + +   P  F Q +  +   +   A +W   
Sbjct: 174 PVHMAILE--GEEEIFLTEATRLEEEFNGVPLYIRPKSFFQTHPEVAAKLYLSARKWTRE 231

Query: 287 QPGERVLDLFCGLGNFTLPLATRGGQVVGVEGDETMVVRGRENAELNGLDNVAFHGADLH 346
                + DLFCG+G F L  A++   + G+E +   +   + +AE  GLD V F   D  
Sbjct: 232 LAPTSIWDLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALD-S 290

Query: 347 GDFTGQSWAKEGFDKILIDPPRSG-AEEICKYLTAFGAQKIVYVSCNPATLARDAGVMVR 405
             F   S  +E  + I+++PPR G  E +C  L+ F  + I+Y SCNP TLA+D   +  
Sbjct: 291 TSFASDSRGEEKPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDLHCI-- 348

Query: 406 NGYRLVRAGVMDMFPHTTHVESIALFEK 433
           +GYR+ +  + DMFPHT H E + + ++
Sbjct: 349 SGYRVTKVQLFDMFPHTDHFEVLVMLQR 376