Pairwise Alignments

Query, 436 a.a., 23S rRNA 5-methyluridine methyltransferase from Marinobacter adhaerens HP15

Subject, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  152 bits (383), Expect = 3e-41
 Identities = 129/466 (27%), Positives = 202/466 (43%), Gaps = 42/466 (9%)

Query: 5   IETLSHDGRGIARQDGKTQFVDGALPGETVMAKVVSSRSKFDELRTEEVLDAAPGRQTPP 64
           ++ L+  GR + R +G+  FV G LPG+ V A++ + + +F E   + VL+ +P +  P 
Sbjct: 16  VDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPVQCAPF 75

Query: 65  CEFADLCGGCSLQHMSGDAQIEFKENTLREHFAHFGGIEPEEWIAPLRSEESLGYRRKAR 124
           C     CGGC+ Q +    Q+ +KE  + +     GG+     +  L S    G+R K  
Sbjct: 76  CAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKME 135

Query: 125 LGVRYVKARESVL-VGFREKRNSFLTDIDRCVVLDPRIGERILPLRNMLHDL-------- 175
               + + R+  L +G R + +  + DI  C +  P     +  +R +  +         
Sbjct: 136 FA--FSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDS 193

Query: 176 --EAYSRIPQV-EIACGDDVAVMVFRNMDELSVGDREKLI---------AFGQAHELHIY 223
             + + R   V E   G D         +      R+ LI         A      L   
Sbjct: 194 RQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEA 253

Query: 224 LQPKGPDT---VH--RIWPESAGRDEERLSY--------RLDEFDLTMRFHPMDFTQVNA 270
           L+ + P+    VH  R+ PE     E  L+         RL   DL +   P  F Q N 
Sbjct: 254 LRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLG--PDSFFQTNT 311

Query: 271 GINRAMVHRAVEWLDVQPGERVLDLFCGLGNFTLPLATRGGQVVGVEGDETMVVRGRENA 330
                +   A       P + V DL+ G+G   L LA   G V G E     V   R NA
Sbjct: 312 AAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANA 371

Query: 331 ELNGLDNVAFHGADLHGDFTGQSWAKEGFDK--ILIDPPRSGA-EEICKYLTAFGAQKIV 387
             N + N +F   D+      +    EG     +++DPPR+G  E++ + ++A   ++IV
Sbjct: 372 ARNNILNCSFVSGDVRASLRRER-PGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIV 430

Query: 388 YVSCNPATLARDAGVMVRNGYRLVRAGVMDMFPHTTHVESIALFEK 433
           YVSCNPAT+ARDA +    GY L  A  +D+FPH+ HVE +AL  +
Sbjct: 431 YVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476