Pairwise Alignments

Query, 436 a.a., 23S rRNA 5-methyluridine methyltransferase from Marinobacter adhaerens HP15

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Ralstonia sp. UNC404CL21Col

 Score =  362 bits (929), Expect = e-104
 Identities = 194/449 (43%), Positives = 271/449 (60%), Gaps = 24/449 (5%)

Query: 4   EIETLSHDGRGIAR------QDGKTQFVDGALPGETVMAKVVSSRSKFDELRTEEVLDAA 57
           EI +L  + RGI R        GK  FV+GALPGE VM +    +  +++    ++L  +
Sbjct: 8   EIVSLDGEARGIGRLTNEDGSPGKVVFVEGALPGERVMYRSHRVKPSYEQASVVDILRQS 67

Query: 58  PGRQTPPCEFADLCGGCSLQHMSGDAQIEFKENTLREHFAHFGGIEPEEWIAPLRSEESL 117
             R TP C+F  +CGGCS+QH+   AQ+  K+  L +   H   + P+    P+   +  
Sbjct: 68  ASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPD-W 126

Query: 118 GYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERILPLRNMLHDLEA 177
           GYR +ARL VR+V A+  VLVGF E+++S++ D+  C VL P +   ++PLR ++  L  
Sbjct: 127 GYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSI 186

Query: 178 YSRIPQVEIACGDDVAVMVFRNMDELSVGDREKLIAFGQAHELHIYLQPKGPDTVHRIWP 237
             R+PQ+E+A G DV  +V RN++ ++  D  +L  F   H +  +LQPKGPDTV+   P
Sbjct: 187 VQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRDFADQHNVQFWLQPKGPDTVYPFHP 246

Query: 238 ESAGRDEERLSYRLDEFDLTMRFHPMDFTQVNAGINRAMVHRAVEWLDVQPGERVLDLFC 297
                 +  L+Y L EF +TM F P DFTQVN  INR ++ RA++ LD QP +R+LDLFC
Sbjct: 247 L-----DRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPSDRLLDLFC 301

Query: 298 GLGNFTLPLATRGGQVVGVEGDETMVVRGRENAELNGLD-NVAFHGADLHGDFTGQSWAK 356
           G+GNFTLP+ATR  +V+G+EG E +  R   NA+ NGLD    F   +L         A 
Sbjct: 302 GIGNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLDAKTTFACRNLFEVSADDIAAL 361

Query: 357 EGFDKILIDPPRSGAEEICKYLTAFG----------AQKIVYVSCNPATLARDAGVMVRN 406
             FD+ LIDPPR GA  + K L               ++IVYVSCNPATLARDAG++V  
Sbjct: 362 GKFDRWLIDPPREGALAVSKALAELSQRGGEAADLLPKRIVYVSCNPATLARDAGLLVHE 421

Query: 407 -GYRLVRAGVMDMFPHTTHVESIALFEKD 434
            GYRL  AGV++MFPHT+HVES+A+FE+D
Sbjct: 422 AGYRLAGAGVVNMFPHTSHVESMAVFERD 450