Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

Subject, 193 a.a., RNA polymerase sigma-H factor AlgT from Pseudomonas fluorescens FW300-N1B4

 Score =  229 bits (585), Expect = 2e-65
 Identities = 110/189 (58%), Positives = 146/189 (77%), Gaps = 1/189 (0%)

Query: 58  QTDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRAIER 117
           + D QLV +V+ GD+ AFDLLV+KYQ ++  +I R+V+D+ E  D+ QE F+KA+RA+  
Sbjct: 5   EEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGN 64

Query: 118 FRGDSAFYTWLYRIAVNTAKNYLESRGRRPQGSADSAEAENFDDGSR-LRDTASPERLLQ 176
           FRGDSAFYTWLYRIA+NTAKNYL SRGRRP  S  S+E   F DG   L+D  SPER L 
Sbjct: 65  FRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALL 124

Query: 177 REQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAVDR 236
           R++++  +++ I QLPE+LR+A  LRE+DGLSYEDIA +++CP+GTVRSRIFRAR+A+D+
Sbjct: 125 RDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDK 184

Query: 237 HLGPLLNHS 245
            L PLL  +
Sbjct: 185 ALQPLLQEN 193