Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella amazonensis SB2B

 Score =  218 bits (556), Expect = 5e-62
 Identities = 105/186 (56%), Positives = 145/186 (77%), Gaps = 1/186 (0%)

Query: 58  QTDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRAIER 117
           ++D +LV  V+ GD+ AF+LLV++YQSRV ++ISRYV +  +V D+ QE F+KA+RA+  
Sbjct: 5   KSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYRALAN 64

Query: 118 FRGDSAFYTWLYRIAVNTAKNYLESRGRR-PQGSADSAEAENFDDGSRLRDTASPERLLQ 176
           FRG+SAFYTWLYRIAVNTAKNYL S+GRR P    D+ +AE +D    L++ ASPERL+ 
Sbjct: 65  FRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPERLML 124

Query: 177 REQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAVDR 236
            +++++ + + + +LPEEL+ A  LRE DG+SYEDIA ++ECP+GTVRSRIFRAR+ +DR
Sbjct: 125 SDEIKRVVFETLEELPEELKMAISLRELDGMSYEDIANVMECPVGTVRSRIFRAREVIDR 184

Query: 237 HLGPLL 242
            L PLL
Sbjct: 185 KLQPLL 190