Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

Subject, 186 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

 Score = 97.4 bits (241), Expect = 2e-25
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 64  VRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRAIERFRGDSA 123
           V + RN    AF+LL+ KYQ ++   I R V +  +  DL QE FVK ++ +++FR DS 
Sbjct: 15  VERTRN---EAFNLLLKKYQQKIYWHIRRLVLNHDDCDDLLQEVFVKVWKNLDKFRSDSQ 71

Query: 124 FYTWLYRIAVNTAKNYLESRGRRPQGSADSAEAENFDDGSRLRDTASPERLLQREQLQKE 183
            YTW+YRIA N +  +L  + +R     D   +E       L D          ++L+ +
Sbjct: 72  LYTWIYRIATNESITFLNKQKQRNNTPLDEVSSE-------LADNLVASSYFNGDKLELK 124

Query: 184 LNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAVD 235
           L KAI  LPE+ R  F ++ +D + YE+I+ +L   +G +++    A   ++
Sbjct: 125 LQKAILTLPEKQRIIFNMKYFDDMKYEEISEVLGTSVGALKASFHIAAKKIE 176