Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

Subject, 200 a.a., RNA polymerase sigma factor RpoE from Herbaspirillum seropedicae SmR1

 Score =  213 bits (541), Expect = 3e-60
 Identities = 106/190 (55%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 56  DSQTDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRAI 115
           + + D QLV +V+ GD+ AF+LLVVKYQ ++  ++SR V D  E  D+ QE F+KA+RA+
Sbjct: 4   EREIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRAL 63

Query: 116 ERFRGDSAFYTWLYRIAVNTAKNYLESRGRRPQGS--ADSAEAENFDDGSRLRDTASPER 173
            +FRGDSAFYTWLYRI +NTAKNYL + GRR   S  AD+ EAE FDD   LRD  +PE 
Sbjct: 64  PQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPES 123

Query: 174 LLQREQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDA 233
           +L  +Q+ + +N A+  LPEELR+A  LRE +GLSY++IA  + CPIGTVRSRIFRAR+A
Sbjct: 124 MLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREA 183

Query: 234 VDRHLGPLLN 243
           +   L PLL+
Sbjct: 184 IAEKLRPLLD 193