Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella sp. ANA-3

 Score =  220 bits (561), Expect = 1e-62
 Identities = 108/185 (58%), Positives = 145/185 (78%), Gaps = 1/185 (0%)

Query: 59  TDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRAIERF 118
           +D QLV +V+ GD+ AF+LLV+KYQS+V S+ISRYV +  +V D+ QE F+KA+RA+  F
Sbjct: 6   SDQQLVERVQRGDKNAFNLLVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYRALPNF 65

Query: 119 RGDSAFYTWLYRIAVNTAKNYLESRGRR-PQGSADSAEAENFDDGSRLRDTASPERLLQR 177
           RG+SAFYTWLYRIAVNTAKNYL S+GRR P    D+ +AE ++    L++ ASPERL+  
Sbjct: 66  RGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLS 125

Query: 178 EQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAVDRH 237
           ++++K + + +  LPEELR A  LRE DG+SYEDIA I++CP+GTVRSRIFRAR+A+D+ 
Sbjct: 126 DEIKKVVFETLETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDKK 185

Query: 238 LGPLL 242
           L PLL
Sbjct: 186 LQPLL 190