Pairwise Alignments

Query, 335 a.a., outer membrane protein (porin) from Marinobacter adhaerens HP15

Subject, 308 a.a., porin (RefSeq) from Shewanella amazonensis SB2B

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 37/295 (12%)

Query: 23  SEMSASELAAKMDSMP-SVYGNIQYVLTHTNVDGAGSTVEHADNGSTLGVKHDHEIAPGI 81
           S ++A+ LA+   + P +VYG +   +   +  G   TV  + N S LGVK   E++  +
Sbjct: 12  SALTAASLASAQAAEPLTVYGKLNVTVQSNDEAGESETVVQS-NASRLGVKGAFELSSSL 70

Query: 82  TGFFKLELEGINADDKSSSNGIDALDEAYIGVKGDSFGQVWVGSDDSVYESAIVKIGNFH 141
             F+ +E E ++A   +  N +      ++G+KG+ FG + VG +D++ + A  K+  F+
Sbjct: 71  EAFYTIEYE-VDAGSDAKENFLAR--NQFVGLKGN-FGALSVGRNDTMLKIAQGKVDQFN 126

Query: 142 EVGSDIFGNYSTGEGDLVQ---YMSPSFGGLTVAAAVQVNGDNDTKG------------- 185
           ++  D+   +  GE  + Q   Y+SP FGG  V A     G     G             
Sbjct: 127 DLSGDLKSLFK-GENRIEQTVTYLSPEFGGFKVGATYAAEGAKSQAGEDGFSLAAMYGDA 185

Query: 186 GADKSYPYQLVA----TYAVDALEVSF----------GMDSNDGGAAADNNENSYGLTAT 231
              KS  Y  VA        D L  +           GM   +  +   +++  Y ++A 
Sbjct: 186 SLKKSAFYASVAYDSEVKGYDILRATVQAKLAGLVLGGMYQQEEKSVDGDSKTGYLVSAA 245

Query: 232 YSAGDFSVIGEYQTRKDVNDIVGVMGVYTMGANQFALSYQMLDDDASGDKKDTVI 286
           Y+  D ++ G++Q  +D  D   +   Y +G      ++    D  S +  D  I
Sbjct: 246 YNIADVTLKGQFQDMEDKGDSWSIGADYKLGKPTKIFAFYTSRDMESAEDTDNYI 300