Pairwise Alignments

Query, 475 a.a., two-component response regulator NtrC from Marinobacter adhaerens HP15

Subject, 471 a.a., nitrogen regulation protein NR(I) (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  613 bits (1580), Expect = e-180
 Identities = 314/470 (66%), Positives = 368/470 (78%), Gaps = 13/470 (2%)

Query: 7   VWIIDDDRSIRWVLERALNQAGMQPRVFDSGESIMMRLEHEQPDAIVSDIRMPGVDGITL 66
           VWI+DDD SIRWVLE+AL  A +    F + ES+   LE  QP  IVSDIRMPG DG+TL
Sbjct: 7   VWILDDDSSIRWVLEKALQGAKLSTASFAAAESLWQALEISQPRVIVSDIRMPGTDGLTL 66

Query: 67  LSQIVDVHPDVPVIIMTAHSDLESAVTSYQTGAFEYLPKPFDVDDAVALVKRAVAHSHEK 126
           L ++   +P +PVIIMTAHSDL+SAV++YQ GAFEYLPKPFD+D+A++LV+RA+ H+ E+
Sbjct: 67  LERLQIHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAISLVERALTHATEQ 126

Query: 127 RASGEPQAEMAQ-RNAEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAQALH 185
             S  P A+  Q +  EIIGEAPAMQEVFRAIGRLS S+I+VLING+SGTGKELVA ALH
Sbjct: 127 --SPTPVAQETQVKTPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALH 184

Query: 186 NHSPRANHPFIALNMAAIPKDLIESELFGHEKGAFTGAGAARQGRFEQANGGTLFLDEIG 245
            HSPR + PFIALNMAAIPKDLIESELFGHEKGAFTGA   RQGRFEQANGGTLFLDEIG
Sbjct: 185 KHSPRKDKPFIALNMAAIPKDLIESELFGHEKGAFTGAANVRQGRFEQANGGTLFLDEIG 244

Query: 246 DMPADTQTRLLRVLADGEFYRVGGTTPIKVDVRIIAATHQDLEKLVQAGTFREDLFHRLN 305
           DMP D QTRLLRVLADG+FYRVGG + ++VDVRIIAATHQDLE+LV  G FREDLFHRLN
Sbjct: 245 DMPLDVQTRLLRVLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLFHRLN 304

Query: 306 VIRVHLPKLAERREDIPRLMQHFLKRAAKELAVEPKILREEAEEYLTTLPWPGNVRQLEN 365
           VIR+HLP L++RREDIP+L  HFL  AAKE+ VE KIL +E    L+ LPWPGNVRQLEN
Sbjct: 305 VIRIHLPPLSQRREDIPQLASHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVRQLEN 364

Query: 366 TCRWLTVMASGREIHIDDLPPELLHQAETPTT-------GTTWQEGLKNWAEQELKRGKK 418
           TCRWLTVMASG+EI   DLPPELL +   PT+          WQ  L  W +Q+L  G  
Sbjct: 365 TCRWLTVMASGQEILPQDLPPELLKE---PTSINPMAKGSQDWQSALTEWIDQKLSEGNS 421

Query: 419 GILDTAVPEFEKIMIETALKHTGGRRRDASILLGWGRNTLTRKINELGMD 468
            +L    P FE+I++ETAL+HT G +++A+  LGWGRNTLTRK+ EL MD
Sbjct: 422 DLLTEVQPAFERILLETALRHTQGHKQEAAKRLGWGRNTLTRKLKELSMD 471