Pairwise Alignments

Query, 538 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor from Marinobacter adhaerens HP15

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  323 bits (827), Expect = 1e-92
 Identities = 197/527 (37%), Positives = 289/527 (54%), Gaps = 15/527 (2%)

Query: 15  MRKNLPVTQREVKMRKGGRLITTTDLRGVITYCNEEFVEISGFSREELVGQAHNIIRHPD 74
           MR NLPV+ REV +     +++TTDL+G ITY N +FV ISGFS +EL+GQ HNI+RHPD
Sbjct: 1   MRLNLPVSGREVVVGDTANILSTTDLKGTITYANPDFVAISGFSEDELLGQPHNIVRHPD 60

Query: 75  MPQAVFKDMWDYLKAGKAWMGVVKNRAKSGDHYWVSAYVTPIRENGQMVGFESVRVEPTR 134
           MP+A F D+W  L+A ++WMG+VKNR K+GDHYWVSA+ TP+  NG++  ++SVR  P  
Sbjct: 61  MPEAAFADLWQTLQANRSWMGMVKNRCKNGDHYWVSAFATPVSRNGKVKEYQSVRTRPQP 120

Query: 135 EQIARAERLYSKISAGK----MTSSFSNR----ALSMLRSGWPFLVSLVLSLGALKINQP 186
           EQI  AE LY+++  G+    + SS   R     L+   +    +V  VL+   +     
Sbjct: 121 EQIRAAEALYAQLRDGRGAPTLRSSVGLRERLALLAAAGAAGGVVVGTVLAASPIAATLA 180

Query: 187 WLAAGLIVMGHALGFGLVFNSLAARLRKLLDLRPDAFRDPIVARTYSDERGLFSQLSLLL 246
            LA G      A    L  + LA + R++ D       +P+    Y+  R    Q+   +
Sbjct: 181 GLALGGAAAVAAATALLPLSRLARQARQVGD-------NPVSQLIYTGRRDEIGQIEFAM 233

Query: 247 VSEEARVRTALARIDDQAELLYEQARASHGYISDGAAAIARQRAETDQTASAINEMTASI 306
              E      + RI D +  L + AR   G +     + ARQ+ ETD  A+AI +M+AS+
Sbjct: 234 KMLETEAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASV 293

Query: 307 QEVAESVTSNAREAEEANRLAGVGSDRSAEALVAIEELVTRVNGIGSTISKLGESTNSIG 366
           QEVA +    A  A  A+  A  G +       +I  L   +      I +L   +  I 
Sbjct: 294 QEVALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEIS 353

Query: 367 EAANLISEIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLARRTRESTVRIQNVID 426
              ++I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT  +T  IQ +I 
Sbjct: 354 RVLDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIG 413

Query: 427 DFRQQVDSAVQATRDGEAVAGQGLEKVREAENSLRDIVTSIQTISDSFISMSAAFEEQSQ 486
             +     AV   +     A   +    +AE+SL  I + +  IS     ++AA ++QS 
Sbjct: 414 SLQTGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSS 473

Query: 487 VSDEINRQITNIAELADHSDAQADSAKQSSDRLSAMSRGLKDLIARF 533
           V +EI++ I +I   +D   A    +++++  ++ ++ G+ +L+ +F
Sbjct: 474 VGEEISQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQF 520