Pairwise Alignments

Query, 538 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor from Marinobacter adhaerens HP15

Subject, 520 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (679), Expect = 2e-75
 Identities = 165/500 (33%), Positives = 265/500 (53%), Gaps = 15/500 (3%)

Query: 24  REVKMRKGGRLITTTDLRGVITYCNEEFVEISGFSREELVGQAHNIIRHPDMPQAVFKDM 83
           +E+++     LI+TT+ RG+ITY N+ F E+SG+S +EL+G  HN +RHPDMP A FK+M
Sbjct: 17  QEIRLTPQDELISTTNTRGIITYVNQRFAEVSGYSADELIGHPHNKVRHPDMPSAAFKEM 76

Query: 84  WDYLKAGKAWMGVVKNRAKSGDHYWVSAYVTPIRENGQMVGFESVRVEPTREQIARAERL 143
           W+ LK+G++W G+VKNR K+GD YWV A+V+PI ENG +VG++SVR++P    +++A  +
Sbjct: 77  WEKLKSGQSWRGIVKNRCKNGDFYWVDAFVSPIFENGTIVGYQSVRLQPQAAYVSKATAI 136

Query: 144 YSKISAGKMTSSFSNRALSMLRSGWPFLVSLVLSLGALKINQPW----LAAGLIVMGHAL 199
           Y ++   K       + LS+++     + ++V S G L     W    + AG I+MG  L
Sbjct: 137 YRRLLHNKPIP----KPLSLMQK--RAVSAVVASTGLLIAGYFWGWGVIIAGAILMG--L 188

Query: 200 GFGLVFNSLAARLRKLLDLRPDAFRDPIVARTYSDERGLFSQLSLLLVSEEARVRTALAR 259
              + ++       KL+D++    +   ++R         S L   L+  +A++   L R
Sbjct: 189 NLAIFYDEAFRIPAKLIDMQT---KYDSISRYIYAGADTSSILDFQLILLQAKMNGVLGR 245

Query: 260 IDDQAELLYEQARASHGYISDGAAAIARQRAETDQTASAINEMTASIQEVAESVTSNARE 319
             DQA  L+  A           A++ +++ + +Q ASA+ EM+++I EVA++    +  
Sbjct: 246 TQDQANQLHAIADQLVVTTEQTYASLDQEKNQLEQLASAMEEMSSTITEVAQNTQRTSTS 305

Query: 320 AEEANRLAGVGSDRSAEALVAIEELVTRVNGIGSTISKLGESTNSIGEAANLISEIAEQT 379
              A  L    S         +E+L   V    +  + L +    +  A   I  IAEQT
Sbjct: 306 INTAYELCLKSSANMKANTQKVEQLAKSVADAANNANLLNQEAERVASAMGEIDSIAEQT 365

Query: 380 NLLALNAAIEAARAGEQGRGFAVVADEVRSLARRTRESTVRIQNVIDDFRQQVDSAVQAT 439
           NLLALNAAIEAARAGEQGRGFAVVADEVR+L+ RT+ ST  I   +D     +++  +  
Sbjct: 366 NLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNAWAKEM 425

Query: 440 RDGEAVAGQGLEKVREAENSLRDIVTSIQTISDSFISMSAAFEEQSQVSDEINRQITNIA 499
                 A +    ++ +  ++  I   +  I       + A ++Q QV  EI   I  I 
Sbjct: 426 EQSRQHAERCANDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNNIHFIT 485

Query: 500 ELADHSDAQADSAKQSSDRL 519
           + +  + A       +++ L
Sbjct: 486 QSSSENLAATHQIGDAANHL 505



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 35/169 (20%)

Query: 245 LLVSEEARVRTALARIDDQAE--------LLYEQARASH-----GYISDGAAAIA-RQRA 290
           LL  E  RV +A+  ID  AE           E ARA         ++D   A++ R + 
Sbjct: 343 LLNQEAERVASAMGEIDSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQL 402

Query: 291 ETDQTASAINEMTA---------------------SIQEVAESVTSNAREAEEANRLAGV 329
            T+  + ++++M +                      IQ  AE+V +  +E  E +  A  
Sbjct: 403 STNSISQSVDKMFSMLNAWAKEMEQSRQHAERCANDIQTSAENVNTIYQEVSEIHTFAQQ 462

Query: 330 GSDRSAEALVAIEELVTRVNGIGSTISKLGESTNSIGEAANLISEIAEQ 378
            +  + +    + E+   ++ I  + S+   +T+ IG+AAN +   AE+
Sbjct: 463 NAVAADQQRQVVHEITNNIHFITQSSSENLAATHQIGDAANHLKHNAEK 511