Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 16  LLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRDR 75
           L++   R DRQAF  L     AR+F    +L    + A +  QE+FI+ +     + R  
Sbjct: 8   LIQQAVRGDRQAFGALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQALPRW-RPE 66

Query: 76  GAPLAWMMTIARYRTLDLMRARKVRQT-AGDEHLEQVEDKRGGPMDDSLRTSGEAQ---- 130
                W++ IAR   LDL+R R+     A DE  E ++     P    LR    A+    
Sbjct: 67  ARLQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPID-----PAPSPLRRLQSARDLEM 121

Query: 131 LTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMAL 181
           L   L  L   QR+ +LL    G ++DEL+ T     GTVKS + R   AL
Sbjct: 122 LERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172