Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 215 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 70.1 bits (170), Expect = 3e-17
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 9/186 (4%)

Query: 7   EVNQDELMRLLRSVAR-KDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIW 65
           +++++ L   L +VA  +D+ AF+ L+     ++    +   + + LA + +QE+   +W
Sbjct: 31  DISEETLRHWLVAVANNRDKSAFRALFDHFGPKVRSFGLSRLSQQGLAMDLVQETLTTVW 90

Query: 66  HHAGEYHRDRGAPLAWMMTIARYRTLDLM-RARKVRQTA-GDE--HLEQVEDKRGGPMDD 121
             A  +  DRG    W+  I R +  D++ R +  R+ A GD+   L  V+   G   D 
Sbjct: 91  TKAHLFDTDRGNVSTWVYAIMRNQCFDMLRRVQHNREDAFGDDIWPLFDVDTHAGDHGDH 150

Query: 122 SLRTSGEAQLTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMAL 181
            L    +A L   L +L  +QR+ +   Y +  +  EL++    P+GT+KS +R GL  L
Sbjct: 151 KL----DALLNQYLSKLPKLQREVVQGIYLQELSQQELADRLGVPLGTIKSRLRLGLEKL 206

Query: 182 KRCLER 187
           K  LE+
Sbjct: 207 KSLLEK 212