Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 206 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 68.6 bits (166), Expect = 7e-17
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 16  LLRSVARK-DRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRD 74
           L+ ++AR  DR AF  L++  A R+     +L  +   AEE  QE+ + +W  A  +   
Sbjct: 32  LIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALLMVWRKAERFDPT 91

Query: 75  RGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSL-RTSGEAQLTG 133
           +     W+ TIAR   +D++  RK R+   D     +E       D  + +   E ++  
Sbjct: 92  KAGAATWIFTIARNLRIDML--RKERRPEIDPEDPLLEPSSPDAADILIEKDQRETRVRT 149

Query: 134 CLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIR 175
            L  L   Q + + LA++   TH E+++    P+GTVKS +R
Sbjct: 150 ALRSLPADQAEVVRLAFFEDLTHVEVADRLGLPLGTVKSRLR 191