Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 191 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 13  LMRLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYH 72
           L  LL  +A +DR AF  LY  +   ++       N    + + + + F+++W  AG + 
Sbjct: 12  LADLLVRIANEDRAAFDALYRALETPVYRFIRSKLNDPFESADILHDVFLEVWRSAGRFE 71

Query: 73  RDRGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQLT 132
             R +  +W+  IA  + +D+ R  K  +T   +  E+  D    P          A L 
Sbjct: 72  -GRSSVKSWVFGIAYRKVIDVFR--KSARTDLTDSFEEEADTDPNPEQCLATAENSAHLL 128

Query: 133 GCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLE 186
            C+E L   QR +I LA++    + E++   + P GTVK+ I      L RCLE
Sbjct: 129 FCMETLKLDQRAAIQLAFFEDQGYREIAAALDVPEGTVKTRIFHAKKLLMRCLE 182