Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 178 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 88.6 bits (218), Expect = 6e-23
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 3/172 (1%)

Query: 16  LLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRDR 75
           L+  +   D++A   LY +    ++   +  A + ELA + + ++ + +W  A ++ + R
Sbjct: 6   LVAQIGMGDKRAMHALYLRYNDAIYAFSLSRAGNPELASDCVHDTMLDVWRTAAKF-QGR 64

Query: 76  GAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQLTGCL 135
            +   W+ +IAR + +D +R R   + A  E + +VED    P   ++  +  A+L  CL
Sbjct: 65  SSVKTWLFSIARNKLVDALRKRG--KHAYVEDVPEVEDTAPNPEAAAIAAAERARLHHCL 122

Query: 136 EELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLER 187
           E LS  QR ++ LA+    T+ E++E    PVGT+K+ I     AL RCLER
Sbjct: 123 EGLSGPQRAAVRLAFLEELTYPEVAEIEAVPVGTIKTRIHHAKRALMRCLER 174