Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 189 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 67.0 bits (162), Expect = 2e-16
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 22  RKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRDRGAPLAW 81
           R+D  AF +L+   A R+    +K      LAE+  Q+    +W  A  +   R +   W
Sbjct: 27  RQDTAAFARLFRHFAPRIKAFLIKSGASDTLAEDCAQDVMTTVWQKAHMFDPSRASVATW 86

Query: 82  MMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQLTGCLEELSDV 141
           + TIAR R +D++R  +  +    E L    +      D  +      +L   L +L + 
Sbjct: 87  IFTIARNRRIDMLRKERRPE---PEELPWGPEPEPDQADVLMLQQESEKLQAALIQLPEK 143

Query: 142 QRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLER 187
           QR  +   Y+   +H E++     P+GT+KS +R  L  L+  L++
Sbjct: 144 QRILVERCYFGDMSHSEIATQTGLPLGTIKSRLRLALDKLRHELKQ 189