Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 222 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score = 76.3 bits (186), Expect = 4e-19
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 11/182 (6%)

Query: 11  DELMR-LLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAG 69
           D L R +LR   ++D+ AF +L+S    ++    ++  N + LA + +QE+   +W  A 
Sbjct: 42  DPLARAILRVANQRDKAAFAELFSHFMPKIRAFGLQRLNQQGLAMDLVQETMTLVWTKAH 101

Query: 70  EYHRDRGAPLAWMMTIARYRTLDLM-RARKVRQTAGDEHLEQVED----KRGGPMDDSLR 124
            Y+ D+G+   W+ TI R +  D++ R +  R+ A  + +  + D    +  GP D  L 
Sbjct: 102 LYNADKGSVATWVFTIMRNQCFDMLRRIQHNREDAFGDDIWPIYDVAVSQENGP-DHKL- 159

Query: 125 TSGEAQLTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRC 184
               A+L   L+ L   QR  +   Y +  T  EL++    P+GT+KS +R GL  LK  
Sbjct: 160 ---TAKLLAHLDSLPLPQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSF 216

Query: 185 LE 186
           LE
Sbjct: 217 LE 218