Pairwise Alignments

Query, 338 a.a., protein containing LysM domain from Marinobacter adhaerens HP15

Subject, 378 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (543), Expect = 5e-60
 Identities = 127/366 (34%), Positives = 193/366 (52%), Gaps = 31/366 (8%)

Query: 3   KLLYALAATTLLITSWAHAAPELRSDHPERYTVVKGDTLWDISARFLNNPWYWPEIWHVN 62
           K L  LA  T   T        L++ HPE Y V KGDTLWDIS  FLN+PW WP +W VN
Sbjct: 6   KRLILLALMTFNSTLVFADTLTLKAGHPESYVVKKGDTLWDISTTFLNDPWKWPRLWDVN 65

Query: 63  PQVANPHLIYPGDRLALVYIDGKPRITK-VASNDVVKLSPKVRSEP------IDTPIPAI 115
           PQ+ANPHLIYPGD+L LV+IDG+PR+ +  AS    +  P +R  P          IPA+
Sbjct: 66  PQIANPHLIYPGDQLTLVFIDGQPRLVRNGASVSTSEAKPHIRKSPEGRVIAKSNAIPAV 125

Query: 116 PLDAIGSFLTDTRIVSPEEINGAPYVLEGEDGRIITGAGDKLYARGEKPA-DKVGVFRRS 174
            L  I ++L   R+V  +     P VL GE        GD +Y   E P   K+GV+ R 
Sbjct: 126 DLALIQNYLVQNRVVDADWFIQQPMVLAGESPSRHHVIGDVIYINSELPLHQKLGVYERG 185

Query: 175 KEFRDPDTGEFLGLEARSIARGDVARENGDVLTVNLTSSSEEVRIGDRLMVSEDRRLTTS 234
           +EF + +TGE LG EA   + G V  E+G V  V L S+  E + G R++  ED  L ++
Sbjct: 186 REFFNKETGEALGQEAILASTGQVI-ESGKVSKVKLLSNFRETKAGFRVLPLEDEALMSA 244

Query: 235 -FVPSAPDQDIEGQMISVDGGVSQIGQFDVVAINRGTREGLEAGNVMAVLKSG------- 286
            F P   +      +++++  + + G+ +VV +++GT++G++ G V ++ + G       
Sbjct: 245 YFTPKPAELKTSASVLAIESKMREAGKLNVVYLDKGTQDGVKPGEVFSIYRDGEEIVINN 304

Query: 287 --------------NLVRDPVTGETIELPSERAGLLMVFQAYEKMSYGLVLQASRVLTVG 332
                         ++V    +  ++++P    G L+VF+ ++K S GL++   R + V 
Sbjct: 305 DGQPVPVMERTAYDDVVASLSSDRSLKMPDVYNGKLLVFKVFDKASLGLIVSTERSVRVD 364

Query: 333 DKVTNP 338
           DK+  P
Sbjct: 365 DKLIAP 370