Pairwise Alignments

Query, 597 a.a., integral membrane sensor signal transduction histidine kinase from Marinobacter adhaerens HP15

Subject, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  178 bits (452), Expect = 8e-49
 Identities = 98/233 (42%), Positives = 141/233 (60%), Gaps = 6/233 (2%)

Query: 354 REGLDRLKDEFVSTVSHELRTPLTSVNGSLKLLQAGAAGELPPKARAMVDVAFRNSEQLQ 413
           R  ++++K EF+STVSHELRTPLT++ G+L +L  G AG++  +AR ++ +A +NSE+L 
Sbjct: 445 RRRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLV 504

Query: 414 HLISDLLDFNKALAGRMPIHLGQIEVQRAVHEACQGNDSMARHYRIPLKPEDCEQ---HW 470
            LI+D+LD  K  AGR+  + G+ +V+  V +A        + Y + L+  D  +     
Sbjct: 505 RLINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYGQDYGVSLEFLDAPELTSSE 564

Query: 471 LMADPLRLRQILDNFISNAIKFSPVDGTVRIWSSYAPDNQIRITVADEGAGVPETFSDRL 530
              DP R  Q++ N +SNAIK SP  G V +         + I V D G G+PE F  R+
Sbjct: 565 ATLDPDRFAQVMANLLSNAIKHSPAGGCVTV-DLRRRGKLLEIGVQDRGPGIPEAFRSRI 623

Query: 531 FQRFAQAESGTERSKAGTGLGLAITRELAGLMGGEVGY--YYDNGARFWVQLP 581
           F+RFAQA+S   R + GTGLGLAITR L   M G++G+    D G RFW+QLP
Sbjct: 624 FERFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLP 676