Pairwise Alignments

Query, 597 a.a., integral membrane sensor signal transduction histidine kinase from Marinobacter adhaerens HP15

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  194 bits (494), Expect = 1e-53
 Identities = 117/284 (41%), Positives = 168/284 (59%), Gaps = 14/284 (4%)

Query: 306 RAATRPLEIMSKKIRAISRDGSA------TGRVSESGPPEIRNLAQAFNTLMREREGLDR 359
           R  +R LE  ++++ A+ R+G          ++S  G  +   L +       ER+ ++R
Sbjct: 700 RGTSRALE-QNRELTALRRNGDTFTIELRVSQISHHGERKFIGLVRDIT----ERKRIER 754

Query: 360 LKDEFVSTVSHELRTPLTSVNGSLKLLQAGAAGELPPKARAMVDVAFRNSEQLQHLISDL 419
           +K E VS VSHELRTPLTS++G+L L+  GA GE  P  R M+D+A +NS +L  L+ DL
Sbjct: 755 MKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPSMRQMLDIAHQNSLRLGRLVDDL 814

Query: 420 LDFNKALAGRMPIHLGQIEVQRAVHEACQGNDSMARHYRIPLKPEDCEQHWLMADPLRLR 479
           LD +K +AG+M + L    +Q  +  A   N   A  +R+ L+        LMAD  RL+
Sbjct: 815 LDMDKLVAGKMALALRAHSLQVQLQLAVGANQGYAAQHRVQLELLPTPSLQLMADDDRLQ 874

Query: 480 QILDNFISNAIKFSPVDGTVRIWSSYAPDNQIRITVADEGAGVPETFSDRLFQRFAQAES 539
           Q+L N ISNA+KFSP DGTVR+      D  +RI V D+G G+   F  R+FQ+F+QA+S
Sbjct: 875 QVLANLISNAVKFSPQDGTVRLGGERRGD-WVRIWVRDQGPGIAPEFRARIFQKFSQADS 933

Query: 540 GTERSKAGTGLGLAITRELAGLMGGEVGYYYD--NGARFWVQLP 581
              R K GTGLGLAI++EL   M G +G+  +  +GA FW +LP
Sbjct: 934 SDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELP 977