Pairwise Alignments

Query, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E3

 Score = 1420 bits (3675), Expect = 0.0
 Identities = 713/1148 (62%), Positives = 888/1148 (77%), Gaps = 16/1148 (1%)

Query: 24   ADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEEDGPA 83
            A  + WG L G++ +LAI E+A A K  TL++T  +  A RLEQ + FF           
Sbjct: 13   AGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFA---------- 62

Query: 84   VSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMHRLPP 143
                 L +L  PDWETLPYDLFSPHQDIIS+RI +L+RLP  SHGVLVVP  T +HRL P
Sbjct: 63   ---PDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAP 119

Query: 144  VNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMGASQP 203
              +L G++L+L++GQ LD+E  R +LEA+GYR  + VYEHGE+AVRGA++D+FPMG+  P
Sbjct: 120  TKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLP 179

Query: 204  FRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQFPDAD 263
            +RIDLFDDEIETLRTFDPE QRSID++E + LLPA EFP  KEA + F++R+ E+F    
Sbjct: 180  YRIDLFDDEIETLRTFDPENQRSIDKVESVRLLPAKEFPLQKEAVTRFKARFRERFDVDF 239

Query: 264  KDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGLNDAVSHFDSETR 323
            +  PI+QD++ GITP GIEYYLPLFFDET+TLFDYLP  T VF+  G+  A  +F ++ R
Sbjct: 240  RRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVR 299

Query: 324  NRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAE-TKDAAGSVNCPTTTLPD 382
            NRYE+RR D  RP+LPP  LFL  E+ F +LK +PRV  S +  +   G    P T LP+
Sbjct: 300  NRYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPATPLPN 359

Query: 383  IAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGWQAFLD 442
            +A++ +A  P   L  FL  F G VL  AES+GRRE L+E L    +  KT+  W  F+ 
Sbjct: 360  LAIEAKANQPLQALSNFLDGFSGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVA 419

Query: 443  DKESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETD-DAGFRDLSE 501
             KE  +AITIAP+++GLVL   ++ALI E+ LFG+RV+QRRRREK  + + DA  ++L+E
Sbjct: 420  SKER-LAITIAPLDEGLVLDNPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTE 478

Query: 502  LRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISRYAGND 561
            LR GAPVVHIDHGVGRYLGL T+ +E +A+EFL L YA G+KLYVPV++LHLI+RY G+D
Sbjct: 479  LREGAPVVHIDHGVGRYLGLATLEIENQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSD 538

Query: 562  TEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYRAFAAG 621
               APLH+LG++ W  AK+KA E++RD AAELLD+YARR AR+G++F DPK  Y  F+AG
Sbjct: 539  DALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAG 598

Query: 622  FPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVLV 681
            FPFEETPDQQ  I +V EDM + +PMDRLVCGDVGFGKTEVAMRAAF+A   G+QVA+LV
Sbjct: 599  FPFEETPDQQTTIDAVREDMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILV 658

Query: 682  PTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTHKLLQG 741
            PTTLLAQQHY SFRDRF+D PV VE++SRF++  + + A+  +  G+ DIVIGTHKLLQ 
Sbjct: 659  PTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQD 718

Query: 742  DIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLRDLSII 801
            D+K KNLGLVIIDEEHRFGV+QKE+LKALR+EVD+L LTATPIPRTLNMA+  +RDLSII
Sbjct: 719  DVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSII 778

Query: 802  ATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRSLIPEA 861
            ATPPARRLSV+TFV +++ + VKEA+LRE+LRGGQVY+LHNDV TIEK A DL  L+PEA
Sbjct: 779  ATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEA 838

Query: 862  RVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKFGLAQL 921
            R+G+ HGQMRER+LE++MSDFYHKRFNVL+ +TIIETGIDVPSANTIIIERADKFGLAQL
Sbjct: 839  RIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQL 898

Query: 922  HQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLEIRGAG 981
            HQLRGRVGRSHHQAYAYLLTPP + IT DA+KRL+AI+  QDLGAGF+LAT+DLEIRGAG
Sbjct: 899  HQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAG 958

Query: 982  ELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPALIPEDY 1041
            ELLG+ QSGQI+++GFTLYM++L+ AVK+IR+G  PN D PL  G E+NLR+PALIPEDY
Sbjct: 959  ELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRLPALIPEDY 1018

Query: 1042 LPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAEALGIV 1101
            LPDVH RL+LYKRIAS    + LK+LQVEMIDRFGLLP+P KNL+R T L+L+AE LGI 
Sbjct: 1019 LPDVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLVRMTLLKLQAEQLGIK 1078

Query: 1102 KVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTGGKLDGIS 1161
            KVD G +  R+EFG+ TPVDPLVL+K +Q  P +Y+ EGA  F+F +       + + + 
Sbjct: 1079 KVDGGPQGGRIEFGAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVE 1138

Query: 1162 RMLGELEP 1169
             +   L P
Sbjct: 1139 ALFEHLTP 1146