Pairwise Alignments

Query, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella sp. ANA-3

 Score = 1201 bits (3106), Expect = 0.0
 Identities = 631/1159 (54%), Positives = 810/1159 (69%), Gaps = 19/1159 (1%)

Query: 15   IAPEFPSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLG 74
            + P         +T   L G  +A+ +    R HKG TL++T  T  A+ +E  + + L 
Sbjct: 7    LTPPVVKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLL- 65

Query: 75   LPPEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPA 134
                      +   +++   PD ETLPYD FSPHQD+IS+R+ TL ++    H V++VP 
Sbjct: 66   ----------AKSVIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPV 115

Query: 135  RTLMHRLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILD 194
             TLM RLPP +YL  N  +L+ G    +   R QL   GY   E VYEHGE+A+RG+ILD
Sbjct: 116  TTLMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILD 175

Query: 195  IFPMGASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSR 254
            IFP G + P RI+LFDDE+ET+R FDPETQRS   ++ + LLPA EFP    A  GFR R
Sbjct: 176  IFPTGVNMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEFPTDSSAIEGFRQR 235

Query: 255  WFEQFPDADKDTP-IYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGLND 313
            +  +F    K+   +YQ V+  + P GIE YLPLFFDE ATLFDYLP  T + T   +  
Sbjct: 236  YRRRFEVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKDTQLVTLGDIEK 295

Query: 314  AVSHFDSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAETKDA-AGS 372
            +      E   RYEDRR D LRP+L PK L+L  EELF   K  PR    A   DA AG+
Sbjct: 296  SARAHLQEVETRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFIAPQPDAVAGA 355

Query: 373  VNCPTTTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELK 432
            V    + LP+++ + +   P   L+ +  E    +L  AES GRREAL+E L +  ++  
Sbjct: 356  VQIDASVLPEVSANHKLKQPLIALQDY-AERAPRMLFSAESEGRREALLELLSKIQLKPV 414

Query: 433  TLSGWQAFLDDKESSVAITIAPMEQGLVL---PEHSVALITETALFGERVLQRRRREKPT 489
              S +  F+   ++ + + ++P+ +G +L    + +V++I ET LFG R+ Q+RRREK  
Sbjct: 415  LFSHFDEFIQS-DAKLGLIVSPLSRGCLLGLGKQTAVSIICETELFGHRISQQRRREKQR 473

Query: 490  E-TDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPV 548
            + ++D   ++L+EL++G P+VH++HGV  Y GL T+   G  +E+L L Y+GG KLYVPV
Sbjct: 474  QISNDTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGDKLYVPV 533

Query: 549  SSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSF 608
            S+LH+ISRY+      A L+KLG D W+ AK KA+EKIRD AAELLDVYARR+AR G S 
Sbjct: 534  SNLHMISRYSVGADGEAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESC 593

Query: 609  EDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAF 668
            +   E Y  FA GFPFEET DQ+ AI +V  DM S   MDRLVCGDVGFGKTEVAMRAAF
Sbjct: 594  DINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAF 653

Query: 669  LATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGR 728
            +A  +GKQV VLVPTTLLAQQHYE+F+DRF+D PV +E++SRFRTA + ++ L+ +E G+
Sbjct: 654  VAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGK 713

Query: 729  ADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTL 788
             DIVIGTHKLLQ + KF+NLGL+IIDEEHRFGV+QKE++KALRA VD+L LTATPIPRTL
Sbjct: 714  VDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTL 773

Query: 789  NMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIE 848
            NMAM  +RDLSIIATPPA+RL+VKTFVR+ D A V+EAILREILRGGQVY+LHN+V TIE
Sbjct: 774  NMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIE 833

Query: 849  KTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTI 908
            K A+D+ +L+PEARV VAHGQMRERDLE++MSDFYH+RFNVLVCTTIIETGIDVPSANTI
Sbjct: 834  KCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 893

Query: 909  IIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGF 968
            IIERAD FGLAQLHQLRGRVGRSHHQAYAYL+TP PK +T+DA+KRL+AI   +DLGAGF
Sbjct: 894  IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGF 953

Query: 969  MLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTE 1028
            MLAT DLEIRGAGELLG+EQSG I  IGF+LYM++L+ AVKA+++G+ P+    L+   E
Sbjct: 954  MLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCE 1013

Query: 1029 MNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQ 1088
            M LRIPAL+PEDY+ DV+ RL LYKRIAS DS E L EL+VE+IDRFGLLP+  KNL+  
Sbjct: 1014 MELRIPALLPEDYVGDVNIRLSLYKRIASCDSEETLDELKVELIDRFGLLPEATKNLMEM 1073

Query: 1089 TELRLRAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRL 1148
            T  + +A  LG  K++   +   +EF     +DP  ++  +QS P  YR++G N  +F L
Sbjct: 1074 TLYKHQATRLGATKIEVHAKGGSIEFSDDHVIDPGFIIGLLQSQPQIYRMDGPNKLKFIL 1133

Query: 1149 KDATTGGKLDGISRMLGEL 1167
               T   +L  +  +L +L
Sbjct: 1134 NAETAKDRLALVKLLLEQL 1152