Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 614 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  579 bits (1493), Expect = e-169
 Identities = 303/619 (48%), Positives = 411/619 (66%), Gaps = 20/619 (3%)

Query: 9   YRSVIADSWNRCIAWGLDHDHEPA-PLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVL 67
           + ++I  SW+RC A+GL+H   PA    P     + +  QHS L+  T  EVLPYY N+L
Sbjct: 10  HEAIIQASWSRCRAFGLNHQSVPAFDQLPAQGIAQLLESQHS-LVQTTHQEVLPYYENIL 68

Query: 68  SNSRCLILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPV 127
           SNS CLI+LAD    VL+SWG +R  E +L   F  GA+W E+  GTNAIGT++A    V
Sbjct: 69  SNSNCLIMLADNQGQVLTSWGTQRFIEPKLAHGFSAGASWMERCTGTNAIGTALACEQAV 128

Query: 128 QIQRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLGMVRLLSQSVENR 187
            I+ +EHFLK NR + GSAAPIFDA R++  VL V SD+YLP +HTLGMV+++SQ+VENR
Sbjct: 129 HIEHDEHFLKANRFMTGSAAPIFDAERKVIAVLDVSSDSYLPPSHTLGMVKMMSQTVENR 188

Query: 188 LINRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEARLDE 247
           LI   F  +HFQ+T NT  +N DS W+G+L+ D+SGQV+++N+RAD LLG++     ++ 
Sbjct: 189 LILNLFRGEHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLLGLSLSRVSIES 248

Query: 248 LFTRHRNHILGHPETETLQLTTRSKVRLSARIKRPTRIP---DANGKTKPSPVPEDLRQS 304
           LF      +L  P+     L      R    ++RP+++        +T P+P P     +
Sbjct: 249 LFKVSLLELLNQPDGLPFALQASGSNRFQCLLRRPSQVSIKARVFTETAPAPAP-----A 303

Query: 305 ARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHRKDQP 364
           +  + ++ L +GDS V++   Q+ ++LE+ +P+LI GETGVGKEV VKALH+AS R  QP
Sbjct: 304 SNAISLNTLHFGDSRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRCKQP 363

Query: 365 LVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPLSAQS 424
            +AVNCAAIP ELVESELFGYE GAFTGA  +GS+G IRKA +G LFLDEIG+MPL  Q+
Sbjct: 364 FIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADRGTLFLDEIGDMPLPTQA 423

Query: 425 RLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCVELPA 484
           RLLRVLQER V PVGS +  PVDI +++ATNR L  +++ G FR DLYYRI GL +ELP 
Sbjct: 424 RLLRVLQERCVQPVGSAELFPVDIRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPP 483

Query: 485 LRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIAIADG 544
           LR R+D++ L + L+  HR+P Q   LS +VL   E HPWPGN+RQ+ +VL+VA+A+A+ 
Sbjct: 484 LRERSDKQALFKRLWEHHREPTQWAGLSREVLDLFERHPWPGNLRQVSSVLQVALAMAEE 543

Query: 545 EQVQVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTLARTLQIYRKCTGNISQ 604
           + ++  HLP+DF  + E  P+E  +P          +    + L R LQ      GNIS 
Sbjct: 544 QPIRPEHLPDDFFVDLEMEPVETPEP-------LTVDLNDAEDLNRQLQ---AVGGNISH 593

Query: 605 AARELSISRNTLYKRLREM 623
            AR L +SRNTLYKRLR++
Sbjct: 594 LARRLGVSRNTLYKRLRQL 612