Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 634 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

 Score =  315 bits (808), Expect = 3e-90
 Identities = 225/633 (35%), Positives = 334/633 (52%), Gaps = 53/633 (8%)

Query: 10  RSVIADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSN 69
           R+ I  SW R ++ G+ H +    L  E +   E+    + LL       + Y       
Sbjct: 34  RAEIDASWRRSLSHGV-HFNGKHELALESSASLEVLLASNRLLIDAAMPAIDYLAE-RQG 91

Query: 70  SRCLILLADQHATVLSSWGD-ERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQ 128
              LI+LA+  AT+L+  G  +R+  + L+     GA W E   GTNA+GT++    P  
Sbjct: 92  KEGLIILANSEATILAVEGRADRLKGSGLQD-ITLGACWSEAARGTNALGTALVEARPTL 150

Query: 129 IQRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAH-TLGMVRLLSQSVENR 187
           I   EH+L        S+ PI      I GVL +  +  L +AH +  ++ +    +E+R
Sbjct: 151 IDCGEHYLDRLSDFSCSSVPIHCPQGDILGVLDLTREGPLGRAHDSTALLAMAVSQIESR 210

Query: 188 LINRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEARLDE 247
           + N  F P+   +  ++     +SPW G+L     GQ++A + +A QLL           
Sbjct: 211 VFNASF-PEQIVLAFHSRRQYLESPWQGLLAVSLGGQILAVSTQACQLLNAE-------- 261

Query: 248 LFTRHRNHILGHPETETLQLTTRSKVRLSARIKRPT--RIPDANG----KTKPSP----- 296
                R+ ++GH   E L +     ++L AR+++     +  A G    KT  +P     
Sbjct: 262 -----RSALVGHRCEEFLGV---DGLQLLARLQQGGIGSLQTAKGEFFYKTLRAPQRSIN 313

Query: 297 ---VPEDLRQSARP-LDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVK 352
               P  + ++ +P LD+++L   ++   R    + + L   LPVL+ GETG GKEV+ +
Sbjct: 314 VTSTPRSVAKNPKPQLDLESLAGSNARYARALRMARQGLANELPVLLLGETGTGKEVIAR 373

Query: 353 ALHRASHRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFL 412
           ALH A  R D+P VAVNCAAIP  L+ESELFGY  GAFTG+R  G +G +++AH G LFL
Sbjct: 374 ALHMAGSRCDKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMIGRLQQAHGGTLFL 433

Query: 413 DEIGEMPLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLY 472
           DEIG+MPL+ Q+RLLRVLQ+R V P+G+ +   +D+ L+ AT+R L   +E  HFR DL+
Sbjct: 434 DEIGDMPLALQARLLRVLQDRKVAPLGAGEEQDIDVALICATHRDLKRLVEEKHFREDLF 493

Query: 473 YRINGLCVELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLV 532
           YR+NG+ V LPALR R D   L+  L  +   P  + +L  ++ + L  + WPGNIRQL 
Sbjct: 494 YRVNGISVMLPALRERDDFSELVTRLLDKLDAP--TVKLKGELSNLLAGYHWPGNIRQLE 551

Query: 533 NVLRVAIAIAD-GEQV-QVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTLAR 590
            VLR A+A+ + GE V  + HLP+  L E  A           E+   GS  E E  L R
Sbjct: 552 MVLRTALAMREPGETVLSLEHLPDSMLDELNA----------CERSTCGSIRENELELIR 601

Query: 591 TLQIYRKCTGNISQAARELSISRNTLYKRLREM 623
             Q      GN+S  A  L ISR TLY++L+++
Sbjct: 602 --QSLDNHHGNVSATADALGISRATLYRKLKQL 632