Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 634 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N1B4

 Score =  316 bits (809), Expect = 2e-90
 Identities = 226/632 (35%), Positives = 327/632 (51%), Gaps = 51/632 (8%)

Query: 10  RSVIADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSN 69
           R+ I  SW R +  G+ H +    L  E +   E+    + LL       + Y       
Sbjct: 34  RAEIDASWRRSLNHGV-HFNAKHELALESSASLEVLLASNRLLIDAAMPAIDYLAE-RQG 91

Query: 70  SRCLILLADQHATVLSSWG-DERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQ 128
              LI+LA+  AT+L++ G  +R   + L+     GA W E   GTNA+GT++    P  
Sbjct: 92  KEGLIILANSDATILAAEGCADRFKGSGLQD-ITLGACWSEAARGTNALGTALVEARPTM 150

Query: 129 IQRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAH-TLGMVRLLSQSVENR 187
           I   EH+L        ++ PI+     I GVL +  +  L +AH +  ++ +    +E+R
Sbjct: 151 IDCGEHYLDRLTDFSCTSVPIYCPQGDILGVLDLTREGPLGRAHDSTALLAMAVSQIESR 210

Query: 188 LINRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNT---VEAR 244
           + N  + P+   +  ++     +SPW G+L     GQ++A + +A QLL       V  R
Sbjct: 211 VFNASY-PEQIVLAFHSRRQYLESPWQGLLAVSLGGQILAVSAQACQLLHAERSALVGRR 269

Query: 245 LDE--------LFTRHRNHILGHPET---ETLQLTTRSKVRLSARIKRPTRIPDANGKTK 293
            +E        L +R     +G  +T   E      R+  R S  +  P R P    K +
Sbjct: 270 CEEFLGVDGLQLLSRLHQGGVGSLQTAKGEFFYKALRAPQR-SINVSTPARTPAKTAKPQ 328

Query: 294 PSPVPEDLRQSARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKA 353
           P              D+++L   ++   R    + + L   LPVL+ GETG GKEV+ +A
Sbjct: 329 P--------------DLESLAGSNARYARALRMARQGLANDLPVLLLGETGTGKEVIARA 374

Query: 354 LHRASHRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLD 413
           LH A  R D+P VAVNCAAIP  L+ESELFGY  GAFTG+R  G +G +++AH G LFLD
Sbjct: 375 LHMAGTRCDKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMIGRLQQAHGGTLFLD 434

Query: 414 EIGEMPLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYY 473
           EIG+MPL+ Q+RLLRVLQ+R V P+G+ +   +DI L+ AT+R L   +E+ HFR DL+Y
Sbjct: 435 EIGDMPLALQARLLRVLQDRKVAPLGAGEEQDIDIALICATHRDLKRLVEDKHFREDLFY 494

Query: 474 RINGLCVELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVN 533
           R+NG+ V LPALR R D   L+  L A+   P     L   +   L  + WPGNIRQL  
Sbjct: 495 RVNGINVMLPALRERDDFNGLVDRLLAKLDAP--KVVLHDDLSRLLGGYHWPGNIRQLEM 552

Query: 534 VLRVAIAIAD-GEQV-QVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTLART 591
           VLR A+A+ + G+ V  + HLP+  L E  A           E+P +GS  E E  L R 
Sbjct: 553 VLRTALAMREPGDTVLTLDHLPDSMLDELTAG----------ERPQSGSIRENELELIR- 601

Query: 592 LQIYRKCTGNISQAARELSISRNTLYKRLREM 623
            Q      GN+S AA  L ISR TLY++L+++
Sbjct: 602 -QSLDTHQGNVSAAADALGISRATLYRKLKQL 632