Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  368 bits (944), Expect = e-106
 Identities = 231/620 (37%), Positives = 340/620 (54%), Gaps = 41/620 (6%)

Query: 13  IADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSRC 72
           +ADSW R    GL  +  P  LK     L+E   +H +L+++ E+E LP +  +++++  
Sbjct: 9   LADSWRRSEGAGLS-ETRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTDS 67

Query: 73  LILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQIQRN 132
            ++L+D    VL  WG  R ++         G NW E++ GTNAIGT++     + +   
Sbjct: 68  RLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGE 127

Query: 133 EHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLGMVRLLSQSVENRLINRQ 192
           +HF + +R +  +A+PIF    ++ G L + S+       TL ++  L+Q VE  L+   
Sbjct: 128 QHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVETALLCSL 187

Query: 193 FGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEARLDELFTRH 252
            G   F++ L  +     S W GIL+ DD G+++  N  A Q LG  +   +L EL    
Sbjct: 188 PG-GRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLGELLGDD 246

Query: 253 RNHILGHPETETLQLTTRSKVRLSARIKRPTRIPDANGKTKPSPVPEDLRQSARPLDIDN 312
                       L L T S +   A   +  +    +G  KP                  
Sbjct: 247 WRAQQAQCLRGELHLAT-SAIGEGALWIQTNKASSLHG-VKP------------------ 286

Query: 313 LDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHRKDQPLVAVNCAA 372
           L + D  ++    Q+ KV+ R +P+L+ GETGVGKE  V+ L++ S R D  LVAVNCAA
Sbjct: 287 LRFHDPQLETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDS-RLDGELVAVNCAA 345

Query: 373 IPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPLSAQSRLLRVLQE 432
           +P EL+E+ELFGY+ GAFTGA  QG LG +R+A  G LFLDEIGE+PL+AQ RLLRVLQE
Sbjct: 346 LPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQE 405

Query: 433 RVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCVELPALRNRADRR 492
           R VTPVG   S  VDI +V AT+  L   + +G FR DLY+R+NGL V LP LR RAD+ 
Sbjct: 406 REVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKS 465

Query: 493 MLIQSLYARHR--DPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIAIADGEQVQVW 550
            LI  L+ ++R   PG  ++L P++L+ LEA+ WPGN+R+L N+++VA  +A+GE+    
Sbjct: 466 RLIHKLHRQYRVNPPGDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGER---- 521

Query: 551 HLPEDFLAEFEANPLEQSDP---------PMQEQPVAGSEAETEDTLARTLQIYRKCTGN 601
            L +  L++     L Q+ P           Q    +  +AE +  +  TL     C GN
Sbjct: 522 ELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTL---ADCDGN 578

Query: 602 ISQAARELSISRNTLYKRLR 621
           IS+AAR L +SRN +Y+ L+
Sbjct: 579 ISEAARRLGVSRNLIYRSLK 598