Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 629 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  336 bits (861), Expect = 2e-96
 Identities = 223/636 (35%), Positives = 326/636 (51%), Gaps = 45/636 (7%)

Query: 2   RKNEYSDYRSV-------IADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSV 54
           R+  + + RSV       I  SW RC   GLD    P    P    L E   +H  L  +
Sbjct: 14  RRRFFGEGRSVDGMLAAPILRSWQRCAGQGLDASRSPLVEPPTARELREFQERHDRLGRL 73

Query: 55  TEAEVLPYYRNVLSNSRCL----ILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQ 110
              E+     N L     L    ++L D    VL   G +       +   + G +W E 
Sbjct: 74  ARPEL-----NALQGDARLTGSVVILTDAAGVVLDMIGSDEFAGRAAQVALRPGVSWSEA 128

Query: 111 NCGTNAIGTSIAVGGPVQIQRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQ 170
           + GTNAIGT++    P+ +   EHF + +R +  +AAP+ D    +AG L +   A +  
Sbjct: 129 DTGTNAIGTALVERQPIAVHGAEHFFERHRILACAAAPLIDPRGVVAGALDMTGPAAIRH 188

Query: 171 AHTLGMVRLLSQSVENRLINRQFGPDHF-QITLNTTADNFDSPWSGILVCDDSGQVIASN 229
            H LG++RL ++ +E+R     F  +H   + L+T      +P  G+L   D G ++ +N
Sbjct: 189 VHALGLMRLAAEQIEHRFFTEGF--EHCTMLRLHTDRALLGTPREGVLAFAD-GVLVGAN 245

Query: 230 QRADQLLGMNTVE---ARLDELFTRHRNHILGHPETETLQLTTRSKVRLSARIKRPTR-I 285
           +    L+ ++      ARL+ L    R      P  +   L      RL  R+  P R  
Sbjct: 246 RHGLDLMNLDWPALDLARLETLLPGVR------PSDQIQMLRGPRGTRLWGRLVDPLRRS 299

Query: 286 PDANGKTKPSPVPEDLRQSARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGV 345
           P A   + P+ VP        P+        D+ +    +++++++E G+PVL+ GETG 
Sbjct: 300 PRAPAASMPAAVPAAPAGEVEPIL-------DAEMMAQLSRTVRLVEAGIPVLLLGETGS 352

Query: 346 GKEVLVKALHRASHRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKA 405
           GK+V  + +H  S R+++P V VNCAA+P  L+ESELFGYEAGAFTGAR QG+ G +R+A
Sbjct: 353 GKDVFARRVHAESARRNKPFVPVNCAALPEGLIESELFGYEAGAFTGARRQGAPGLLRQA 412

Query: 406 HKGVLFLDEIGEMPLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENG 465
             GVLFLDEIG+MPLS QSRLLRVLQ++ ++P+G    VPVD  L+ AT++PL T +  G
Sbjct: 413 DGGVLFLDEIGDMPLSLQSRLLRVLQDKQISPLGGGRPVPVDFALICATHQPLGTLLAAG 472

Query: 466 HFRADLYYRINGLCVELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWP 525
            FR DLY+RI    VE P +R+  DR  L+++L+ +        QLS +V   L A+ WP
Sbjct: 473 AFRQDLYFRIAQYVVERPPVRHHPDRLALVRTLWRQLGGEDAGVQLSAEVERVLAAYNWP 532

Query: 526 GNIRQLVNVLRVAIAIAD-GEQVQVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAET 584
           GN RQLV  LR  + + + G  V+V  LP +  A   A   + S    +  P      +T
Sbjct: 533 GNYRQLVGTLRALLVLGEPGHPVEVAALPAEITAAAGAVESQVS----EMLPGTSLAEQT 588

Query: 585 EDTLARTLQIYRKCTGNISQAARELSISRNTLYKRL 620
              L   L       GN+S+AAR L I R+T Y+RL
Sbjct: 589 RSVLQAALD---ASGGNVSRAARRLGIDRSTYYRRL 621