Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 474 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  223 bits (569), Expect = 1e-62
 Identities = 127/291 (43%), Positives = 173/291 (59%), Gaps = 6/291 (2%)

Query: 336 PVLITGETGVGKEVLVKALHRASHRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARA 395
           PVL+ G TG GKE+   ALH  S R   PLV++NCAAIP +L ESELFGY  GAF+GA  
Sbjct: 178 PVLVLGATGTGKELAAHALHAESTRAAGPLVSINCAAIPKDLFESELFGYVRGAFSGAHH 237

Query: 396 QGSLGFIRKAHKGVLFLDEIGEMPLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATN 455
            G +G I  A  G LFLDEIG+MPL AQ++LLRVL+ R +  VG+  + PVD  L+ ATN
Sbjct: 238 SGKMGQIELADGGTLFLDEIGDMPLQAQAKLLRVLESRTICRVGAVTAEPVDFRLIAATN 297

Query: 456 RPLTTRIENGHFRADLYYRINGLCVELPALRNR-ADRRMLIQSLYARHRDPGQSEQLSPK 514
           R +   ++ G FR DLYYRIN   +E+P+LR+R  D   L     AR    G +   +P 
Sbjct: 298 RNIKDMVQAGTFREDLYYRINTFIIEIPSLRDRKEDILPLAHHFLARMGHEGVT--FTPA 355

Query: 515 VLSALEAHPWPGNIRQLVNVLRVAIAIADGEQVQVWHLPEDFLAEFEANPLEQSDPPMQE 574
            +SAL++  WPGNIRQL N +  A  + +G  + V  LP + +     +P+     P   
Sbjct: 356 AVSALQSFEWPGNIRQLHNAILHAATMREGSAIDVCALPPE-IRPVHTSPVAPCPLPQDR 414

Query: 575 QPVAGSEAETEDTLARTLQIYRKCTGNISQAARELSISRNTLYKRLREMGV 625
             +AG  A  E  L       R+  GN+++AA  L +SR TLY+++++ GV
Sbjct: 415 SDLAGILAHNEAALIE--NALREQGGNVTRAASALGVSRATLYEKMKKHGV 463