Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 628 a.a., Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  400 bits (1027), Expect = e-115
 Identities = 243/638 (38%), Positives = 358/638 (56%), Gaps = 57/638 (8%)

Query: 13  IADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSRC 72
           + DSW R +  GL        L+   + L+  + Q+ +L+ + ++  LP +  ++++S  
Sbjct: 23  LTDSWQRSLGAGLSEFRAGEDLRLTRSELKYKHEQYQQLIELVQSHALPLFNQLMAHSNS 82

Query: 73  LILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQIQRN 132
            +LL+D    VL  WG  R +          G NW E+  GTNAIGT++     V +   
Sbjct: 83  RLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEKYKGTNAIGTALTAKQAVSVVGE 142

Query: 133 EHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLGMVRLLSQSVENRLINRQ 192
           +HF++ NR +  +A PIF    ++ GVL + S+       TL +V  L+Q VE  L+   
Sbjct: 143 QHFIRQNRFMSCTACPIFSPQGEMLGVLDITSEQQRHSQQTLMLVSSLAQQVETALLCHL 202

Query: 193 FGPD-HFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGM----NTVEARLDE 247
             PD H++I         +S W GI++    G+++  N  A QLL      ++++  L +
Sbjct: 203 --PDSHYRIDFAAQPSLLNSGWQGIVIASSDGRIVGCNPMAKQLLSQAKLGDSLDQHLGD 260

Query: 248 LFTR----HRNHILGHPETETLQLTTRSKVRLSARIKRPTRIPDANGKTKPSPVPEDLRQ 303
            + R    HR+  L H +T+ L LT                      +TK +   +D   
Sbjct: 261 NWARAGGFHRDSAL-HVQTQALALT----------------------QTKSTRTLQD--- 294

Query: 304 SARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHRKDQ 363
             +PL+   + + D  ++R   Q+ KV+ + +P+L+ GETGVGKE  VK LH  S R+ Q
Sbjct: 295 --KPLNQLGVRFRDPLLERAWQQANKVITKQIPLLVLGETGVGKEQFVKKLHAQSTRRAQ 352

Query: 364 PLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPLSAQ 423
           P+VAVNCAA+P ELVESELFGY+AGAFTGA   G +G IR+AH G LFLDEIGEMPL+AQ
Sbjct: 353 PIVAVNCAALPAELVESELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQ 412

Query: 424 SRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCVELP 483
           SRLLRVLQER V PVGS  S  VDI ++ AT+  L + +  G FR DL+YR+NGL V LP
Sbjct: 413 SRLLRVLQEREVVPVGSNQSFKVDIQIIAATHMDLESLVAQGLFRQDLFYRLNGLQVRLP 472

Query: 484 ALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIAIAD 543
           ALR R D   +I  L+ RHR   Q+  L  ++L+ L  + WPGN+R+L N+++VA  +A+
Sbjct: 473 ALRERQDIERIIHKLHRRHRSSAQT--LCTELLAQLMRYDWPGNLRELDNLMQVACLMAE 530

Query: 544 GEQV-QVWHLPEDFLAEFEAN---------PLEQSDPPMQEQPVAGSEAETEDTLART-- 591
           GE V ++ HLP D+LA+   N          +  ++       +  S + T D+L  T  
Sbjct: 531 GEAVLEINHLP-DYLAQKLMNLACEPQTLTEVADAEATAHPHELVESSSVTIDSLHGTIN 589

Query: 592 ---LQIYRKCTGNISQAARELSISRNTLYKRLREMGVR 626
              LQ YR C GN+SQ A+ L ISRN LY++L+++G++
Sbjct: 590 LNVLQAYRACDGNVSQCAKRLGISRNALYRKLKQLGIK 627