Pairwise Alignments

Query, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  332 bits (851), Expect = 1e-95
 Identities = 187/396 (47%), Positives = 252/396 (63%), Gaps = 9/396 (2%)

Query: 3   TPTVLIIDDEKNLVSSLMFSLEEEGMTVFAAYDGKSGLTEIEKRTPDVVLLDLKLPDQSG 62
           T  +L+IDDEKN +  L   L + G  V A  D ++ L  +E+   DVV+ D+K+P  +G
Sbjct: 4   TTHILVIDDEKNYLLVLEALLTDAGYAVTALNDPETALAFLEESEVDVVITDMKMPRVTG 63

Query: 63  FEVLDQVQAL-PAPPITIMISAHGDTRAAVEAVKKGAQDYITKPFDLDELILLIQR---- 117
            EVL++V+   P  P+ IM +A G    AV+ +K GA DYITKPF  DEL+L +Q     
Sbjct: 64  REVLERVKKTWPHIPVCIM-TAFGSIEGAVDVMKYGAFDYITKPFSNDELLLSVQNAAEL 122

Query: 118 NHKHRQLTEEVAYRREREADVHGLVGHSSAMRKLLDQVERIGKSSARTVLLQGPSGSGKT 177
           +  HRQ     A   ER    H ++G S A+R++LD V+R   S + TVL+ G SG+GK 
Sbjct: 123 SRVHRQYRALRANLEERYG-THQIIGRSKAIREVLDMVDRAAPSRS-TVLITGESGTGKE 180

Query: 178 LIAKALHATKDR-AAPFVSVNCASLPENLLEAELFGAEKGAYTGADKRRTGLVELANGGT 236
           L+A+A+H +  R + PFVSVNC +L   +LE+ELFG EKG++TGA   R G  E A+GGT
Sbjct: 181 LVARAIHFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQADGGT 240

Query: 237 LFLDEIGELPLPLQAKLLTFLETHRFRAVGGQKEIEADLRVIAASNRDLQTEAQTGAFRE 296
           LFLDEIGEL   LQ KLL  L+  RF  VGG  EIE D+RV+AA+N+DLQ E + G FRE
Sbjct: 241 LFLDEIGELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVENGTFRE 300

Query: 297 DLFYRLNVMPLTIPSLAERRDDIPMLASNFATGLAAQEGCRPINLSSETLTTLCNYDWPG 356
           DL+YRLNV+ + +P L ERR+DIP+L  +F   LA   G +P   + E    L  Y+WPG
Sbjct: 301 DLYYRLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTGYEWPG 360

Query: 357 NIRELRNTIERLTILHAGESINVDQLPPEITKSAPQ 392
           NIR+L+N +ER  +L A +++ VD LPPEI     Q
Sbjct: 361 NIRQLQNVVERCLVLVASDTVGVDDLPPEIRDEESQ 396