Pairwise Alignments

Query, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  331 bits (849), Expect = 2e-95
 Identities = 175/384 (45%), Positives = 244/384 (63%), Gaps = 5/384 (1%)

Query: 6   VLIIDDEKNLVSSLMFSLEEEGMTVFAAYDGKSGLTEIEKRTPDVVLLDLKLPDQSGFEV 65
           +LIIDDE ++  SL   LE+EG  V  A DG++GL  +   TPDVV LD+ +P   G  V
Sbjct: 5   ILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGLTV 64

Query: 66  LDQVQALPAPPITIMISAHGDTRAAVEAVKKGAQDYITKPFDLDELILLIQRNHKHRQLT 125
           L+ + A       IMIS HG    AV A+KKGA D+I KP  L+++++  +R  + R+L 
Sbjct: 65  LEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMRELR 124

Query: 126 EEVAYRRER---EADVHGLVGHSSAMRKLLDQVERIGKSSARTVLLQGPSGSGKTLIAKA 182
            E    R      +    L+G S+ MR++ +Q+ R+  + A  VL+ G +G+GK L A+A
Sbjct: 125 RENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDA-WVLITGENGTGKELAARA 183

Query: 183 LHATKDRAA-PFVSVNCASLPENLLEAELFGAEKGAYTGADKRRTGLVELANGGTLFLDE 241
           +HA   RA  P V+VNCA++PE L+E+ELFG EKGA+TGA+  RTG  E+A+ GTLFLDE
Sbjct: 184 VHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDE 243

Query: 242 IGELPLPLQAKLLTFLETHRFRAVGGQKEIEADLRVIAASNRDLQTEAQTGAFREDLFYR 301
           IG++ L  QAK+L  L+   F  VGG + I  D+RV+AA+N++L+ +   G FREDL+YR
Sbjct: 244 IGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYR 303

Query: 302 LNVMPLTIPSLAERRDDIPMLASNFATGLAAQEGCRPINLSSETLTTLCNYDWPGNIREL 361
           L V PL++P+L ER DDI  L   F   L       P+  + +    L  Y WPGN+REL
Sbjct: 304 LRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVREL 363

Query: 362 RNTIERLTILHAGESINVDQLPPE 385
           RN +ER+ ILHAGES++V+ LPPE
Sbjct: 364 RNFVERMLILHAGESVDVEDLPPE 387