Pairwise Alignments

Query, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  293 bits (749), Expect = 9e-84
 Identities = 165/391 (42%), Positives = 236/391 (60%), Gaps = 5/391 (1%)

Query: 6   VLIIDDEKNLVSSLMFSLEEEGMTVFAAYDGKSGLTEIEKRTPDVVLLDLKLPDQSGFEV 65
           +L+IDDE      +   +E+ G  V  A  G+ GL  +      VVLLD+++P   G E 
Sbjct: 4   LLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHEQVHVVLLDMRMPGMDGQET 63

Query: 66  LDQVQALPAPPITIMISAHGDTRAAVEAVKKGAQDYITKPFDLDELILLIQRNHKHRQLT 125
           L ++  +      +M++A+G   +AVEA+K GA DY+TKP D +EL+ ++++  +HR+L 
Sbjct: 64  LARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEHRRLV 123

Query: 126 EEVAYRREREAD---VHGLVGHSSAMRKLLDQVERIGKSSARTVLLQGPSGSGKTLIAKA 182
            E    R+R  +      LVG S  M ++ D + + G S A TVL+ G SG+GK LIA+A
Sbjct: 124 VENEELRKRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEA-TVLIMGESGTGKELIAQA 182

Query: 183 LHATKDRAA-PFVSVNCASLPENLLEAELFGAEKGAYTGADKRRTGLVELANGGTLFLDE 241
           LH    RA  P V VNCA+LP +LLE+ELFG  +GA+TGA K + G  +LA GGTLFLDE
Sbjct: 183 LHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTLFLDE 242

Query: 242 IGELPLPLQAKLLTFLETHRFRAVGGQKEIEADLRVIAASNRDLQTEAQTGAFREDLFYR 301
           IGELPL LQAKLL  L+      +GG + +  D+R+IAA+NRDL+ E   G FREDL++R
Sbjct: 243 IGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFREDLYFR 302

Query: 302 LNVMPLTIPSLAERRDDIPMLASNFATGLAAQEGCRPINLSSETLTTLCNYDWPGNIREL 361
           LNV+ +  P L +R +D+P L       L  +       +S++    L  + WPGN+REL
Sbjct: 303 LNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGNVREL 362

Query: 362 RNTIERLTILHAGESINVDQLPPEITKSAPQ 392
            N +ER  IL   +S++ D LPP++    PQ
Sbjct: 363 ENVLERALILSRTDSLSADALPPQLFGDEPQ 393