Pairwise Alignments

Query, 333 a.a., cytochrome d ubiquinol oxidase, subunit II from Marinobacter adhaerens HP15

Subject, 343 a.a., cytochrome d ubiquinol oxidase, subunit II from Synechococcus elongatus PCC 7942

 Score =  254 bits (648), Expect = 3e-72
 Identities = 134/324 (41%), Positives = 201/324 (62%), Gaps = 4/324 (1%)

Query: 6   LPLIWAFIIGFGIIMYVLMDGFDLGVGILFPFAPNEEARDTMMNSVAPVWDGNETWLVLG 65
           LP +W  I+   + +YV++DGFDLGVGIL     +E  R  +M S+  +WD NETWLVL 
Sbjct: 8   LPQVWFVILALFLFLYVVLDGFDLGVGILSLTTSSENRRTILMTSLGNIWDANETWLVLM 67

Query: 66  GAGLLAAFPMVYSIFLPALYIGVFLLLAGLIFRGVAFEFRFKARTSRYLWNWAFAGGSTV 125
           G  L  AFP+ Y   L ALY+ +FL++ GLI R VAFEFR  A   R+ WN AF  GS +
Sbjct: 68  GGALFGAFPLAYGTILNALYLPIFLMIFGLILRAVAFEFRENAERKRF-WNLAFGSGSFL 126

Query: 126 ASFAQGAVVGAYIQGFET-ANGVYVGGALDWLTPFTVLTGLGMLAGYSLLGSTWLIMKTE 184
           A+ AQG  +G+ + G  T A G Y+GG  DWL   ++L  L ++  Y L+GST+LIM+T 
Sbjct: 127 AALAQGFALGSVLTGIRTDAGGHYIGGLWDWLNWHSLLVSLTLIQAYVLIGSTYLIMRTA 186

Query: 185 GYLQQWAYKITLPLLLAVLVVFGIIGVWTPFVDEMVRERWFSNLSI--IWVLPVLTLLCA 242
           G LQ+  ++      +  LV    I   TPF+ E  R+R      I    ++PVL +L  
Sbjct: 187 GSLQETHFQTAKLATITTLVGAIAITATTPFISESARDRLLQVPFIYGFTLIPVLGVLLI 246

Query: 243 IQIYRSVRDRRDGMPFVATMGLFITTYLGLVVSRWPYVVPPEYTLWEAASAYESQLFLLL 302
             ++RS+  +++  PF+ T+ LF+ T++GL +  +PYV+PP+ T+++AA++  + +F+++
Sbjct: 247 AILWRSLSRKQEFAPFIWTVLLFLLTFIGLGLLVFPYVIPPQITIYQAAASPSALVFMIV 306

Query: 303 GLLFVIPIVLVYTAWTYWVFRGKV 326
            + F+IPI+L Y  + Y VFRGKV
Sbjct: 307 FIGFLIPIMLFYNIYNYIVFRGKV 330