Pairwise Alignments

Query, 539 a.a., NADH dehydrogenase subunit L from Marinobacter adhaerens HP15

Subject, 1265 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score = 86.7 bits (213), Expect = 5e-21
 Identities = 79/344 (22%), Positives = 152/344 (44%), Gaps = 27/344 (7%)

Query: 96  ATMVAFIGWVILRFADNYLSQDPGRDRFLPWFLVTVASVLVLVFTNHLLILAGAWIGVSL 155
           A + A IG  +  ++  Y+    G +R+  +  + + S++ +  TNHL      W  +  
Sbjct: 283 ALIFAAIGLAVTVYSVGYMKHGHGVNRYFFFLFLMIGSLIGVATTNHLGNFYLFW-ELMT 341

Query: 156 ALHHLLTLYQDRPQARMAAVQKFIVSRVGDALVVSGVVALYLHYGTFYLPDMVQNEGARA 215
            + +LL +++   +A  A ++ F++   G  ++  G++ L+   GTF + ++    G  +
Sbjct: 342 WMSYLLVIHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGTFEISEIAPCIGTLS 401

Query: 216 GGSTALTVASVVLALAAVLKCAQIPFHGWLIRVME-APTPVSA-----LLHAGVINLGGF 269
                + +A+ ++   A  K    P + WL      AP+ +S      L  AG++ +   
Sbjct: 402 PALAGVVLATFLIGFMA--KAGLFPLYSWLPEAHPVAPSSISGPMSGILTKAGILGMVKL 459

Query: 270 LW-------LRLFPVFDGFTAGHMILLVIGGMTAVVAVLTMITQYSVKHALAWSTCAQMG 322
           L+       L  F +F G +    +L+ +GG+T ++  +    Q  +K  LA+ST AQ+G
Sbjct: 460 LFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQAYRQTDIKRLLAYSTLAQIG 519

Query: 323 FMLFEIGMG---AYTLALLHLLAHSLYKAHSFLASGRTVAVSAATRFPESPSANR-LSWA 378
            +   +G+G   A    L H+  H++ K   F A G  +  SA     +     + + + 
Sbjct: 520 EITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFAVGALILRSAGRSLDDLKGLGKVMPFT 579

Query: 379 GL---TGLLAAAILVQFPWIVENNPVFGALLVLAVSAAAMGIPA 419
           GL    GLLA   +  F   V        ++   V A  +G+ A
Sbjct: 580 GLCLGIGLLAIMGVPPFGGFVSK----FLMIYACVEAGQVGVAA 619



 Score = 85.5 bits (210), Expect = 1e-20
 Identities = 81/338 (23%), Positives = 158/338 (46%), Gaps = 30/338 (8%)

Query: 48   WALLASMAV--SVVMGILLLIQPYTGGDSN------RLATLGGRFGLYPDGIAVWMATMV 99
            W+L A +AV  +VV+ IL        G  +       LA +  + G Y D ++ W A ++
Sbjct: 706  WSLAALIAVVGAVVVYILGKRSTVVAGSLSVAVMALALAGILIQSGRY-DLLSFWFAALI 764

Query: 100  AFIGWVILRFADNYLSQDPGRDRFLPWFLVTVASVLVLVFTNHLLILAGAWIGVSLALHH 159
              +G + L ++  Y++    ++RF  +F++ +  +L +  ++ L      W  +S    +
Sbjct: 765  VVVGAINLLYSIGYMAHGHAQNRFFFFFVMMIGGLLGVTASDDLFNFFAFWEVMSSWTLY 824

Query: 160  LLTLYQDRPQARMAAVQKFIVSRVGDALVVSGVVALYLHYGTFYLPDMVQNEGARAGGST 219
            L+ ++++   +     + FI + VG + +  GV  L    GTF +  + Q   +   G  
Sbjct: 825  LVIIHEETKDSLDEGTKYFIFNFVGASFLFLGVAILAAKAGTFEMALLPQAALSMPVGWL 884

Query: 220  ALTVASVVLALAAVLKCAQIPFH-GWLIRVMEAPTPVSALLHAGVINLGGFLWLRLFPVF 278
            A++   ++  L  ++K AQ+P    + +    APTPVS  + A ++ +G +  L++  V 
Sbjct: 885  AVSAGLILAGL--LMKAAQLPLRIDYQMHPAPAPTPVSGYISAVLLKVGPYGVLKIM-VA 941

Query: 279  DGFTAG--------------HMILLVIGGMTAVVAVLTMITQYSVKHALAWSTCAQMGFM 324
             G   G               +++ VI  +T + A    + Q  VK  L +ST +Q+G++
Sbjct: 942  LGAGGGLARIAGLGAWMPDPLVVVQVIAALTVLYAGAMAVVQNGVKRLLIYSTVSQLGYV 1001

Query: 325  LFEIGMGA---YTLALLHLLAHSLYKAHSFLASGRTVA 359
            L  + +G+       L+H + H + K   FLA+G  +A
Sbjct: 1002 LLGLSLGSALGVAGGLMHFVNHMMLKDILFLAAGCILA 1039



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 313 LAWSTCAQMGFMLFEIGMG---AYTLALLHLLAHSLYKAHSFLASGRTVAVSAATR 365
           L +ST A++G++L  +G+G     T A++HL   ++ +A   +A+   +  S +++
Sbjct: 33  LTYSTIAEIGYVLMGLGIGTAAGETGAVMHLGYQAIMRALVVVAAWHLIRRSGSSK 88