Pairwise Alignments

Query, 678 a.a., NAD-dependent DNA ligase from Marinobacter adhaerens HP15

Subject, 833 a.a., DNA ligase (EC 6.5.1.2) from Xanthomonas campestris pv. campestris strain 8004

 Score =  553 bits (1424), Expect = e-161
 Identities = 267/486 (54%), Positives = 359/486 (73%), Gaps = 1/486 (0%)

Query: 4   ATPDIIQRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDTSPT 63
           A+PD  QR++ LR  I+D NYRY+VLD+P++ D EYDRL REL+ LE  +PELA+  SPT
Sbjct: 3   ASPDPAQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADSPT 62

Query: 64  RRVGSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITEDVEYVCEPKLDGL 123
           +RVG  A + F EV H LPMLSL NAFS++E+ +F RR+ +RL   + V +  EPKLDGL
Sbjct: 63  QRVGYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERKQPV-FCAEPKLDGL 121

Query: 124 AVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKD 183
           A+SL YE G     ATRGDG +GED++AN+RT+ ++PL+LRG   P+++EVRGEVYMP+ 
Sbjct: 122 AISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPRA 181

Query: 184 GFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQ 243
            FE  N ++  +G K   NPRN AAGSLRQ  + +TA+RPL   AY V    +  LP T 
Sbjct: 182 AFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPTH 241

Query: 244 WEGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKA 303
              L +++ WGF ++  +   +G+E  L  Y  + + RDGLP++IDG+V+K++ L  Q+ 
Sbjct: 242 STMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQRE 301

Query: 304 LGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLH 363
           +GFVSRAPRWA+A KFPAQE+ T +E +E Q+GRTGA TPVARLKPV V GV V+NATLH
Sbjct: 302 MGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATLH 361

Query: 364 NMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVIQIE 423
           N D+I RLDV +GDTV +RRAGDVIP+V  VVAE+RP+G    ++P QCPVC S++++ E
Sbjct: 362 NADQIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCPVCGSEIVREE 421

Query: 424 GEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVETVADLYRLTT 483
           G+AV RCSG L CPAQRKEA RH+ SR+A+D++GLG+K+I+++VD G+V+ VADLY L  
Sbjct: 422 GQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLNV 481

Query: 484 DDLVKL 489
           D L++L
Sbjct: 482 DQLLQL 487



 Score =  110 bits (275), Expect = 3e-28
 Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 8/161 (4%)

Query: 519 LGIREVGEATAKALAGHFGTLEAIAAADEESLQTVPDVGPIVAGHIRSFFEQTHNRETLD 578
           L I +V    A+ LA    + +A+ A++ + L       P++A  ++ +  +  N     
Sbjct: 673 LDIPKVTPVRAQQLAAATASFDALIASEADPLLQAGVPAPVIAS-LQQWLARPENAALAT 731

Query: 579 ALREA-----GVRWQEEEVREGEKPLKGQTWVLTGTLSGMTRDEAKEKLESLGAKVAGSV 633
           A + A         Q + V+ G  PL GQT V+TGTL+ +TRD AK++LESLGAKVAGSV
Sbjct: 732 AAQRAMDALLAQLPQADAVQAG--PLDGQTVVITGTLAALTRDAAKQRLESLGAKVAGSV 789

Query: 634 SKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHG 674
           SKKTA +VAGE AGSKL KA+ L V + DEA L+A L EHG
Sbjct: 790 SKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLSEHG 830



 Score = 79.3 bits (194), Expect = 7e-19
 Identities = 42/97 (43%), Positives = 61/97 (62%)

Query: 490 ERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKALAGHFGTLEAIAAADEES 549
           +++  K A NL+ AI+ +R+  L RFL+ALGI  VGE+TAKAL+  FG L+ I       
Sbjct: 553 KKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGELDVIRHLPWPL 612

Query: 550 LQTVPDVGPIVAGHIRSFFEQTHNRETLDALREAGVR 586
            + VPD+G  VA  +  FF+Q  N++ +D L + GVR
Sbjct: 613 FKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVR 649