Pairwise Alignments

Query, 624 a.a., preprotein translocase subunit SecD from Marinobacter adhaerens HP15

Subject, 622 a.a., preprotein translocase subunit SecD from Pseudomonas fluorescens FW300-N2C3

 Score =  657 bits (1696), Expect = 0.0
 Identities = 347/623 (55%), Positives = 467/623 (74%), Gaps = 7/623 (1%)

Query: 1   MLNKYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAGVLDRAVGVLES 60
           MLNKYPLWK ++IL  L +G IY+ PNL+PDD AIQ++GA ++ +V    LDRA   L++
Sbjct: 1   MLNKYPLWKYVLILAVLAVGLIYSAPNLYPDDPAIQVSGASTALQVTQADLDRASAALKA 60

Query: 61  RGIEVKSSTLQD--RDALIRLTNSEDQLQARPLVQAALGNEYLVALNMAASTPGWLKSLG 118
             IEVK++++ +  +  L+RL  SEDQL A+ +V+ ALG++Y+VALN+A +TP WL+ LG
Sbjct: 61  SNIEVKAASIAENGKGGLLRLVKSEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRKLG 120

Query: 119 AGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRGGDVQDNREIV 178
           A PMKLGLDL GGVHFLLEVDME A+  R+    G +K  LR+ER+RYR    Q N  I 
Sbjct: 121 AHPMKLGLDLSGGVHFLLEVDMEKALDARMKVYEGDVKSLLRKERLRYRSLP-QLNGAIQ 179

Query: 179 LSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTLSEAEVTAIQDYALEQNLTTI 238
           L F DE +R +A  ++R  +N+F +       + +L L ++ A++  I++Y+++QNLTT+
Sbjct: 180 LGFSDEDTREQARALIRKNFNDFDIVPADLNGQAVLRLAMTPAKLAEIREYSIKQNLTTV 239

Query: 239 RNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLGATANLEFRMEARQDAPSSET 298
           RNRVNELGVAEP+VQ+QGA+RI+VELPGVQDTA+AKR+LG TANLEFR+ A   A  + T
Sbjct: 240 RNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAEPGASKATT 299

Query: 299 EEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMNRATRNA 358
           E F FR+  +  A++E+ +I TG+ V +AQ  FDE G+PQVNI +D  GG+LM+RATR+ 
Sbjct: 300 ESFEFREGGRPAAQIERGLIITGDQVTDAQAGFDEQGRPQVNIRLDGHGGELMSRATRSN 359

Query: 359 IGRRMAVLFIEYR-TETETR-MVDGEPQEVENRVV--EKGIISLATVQSALGSSFRITGL 414
           +GR MAV+FIE + T T T+ +VDG  ++V  +    EK IISLAT+QS LGS FRITGL
Sbjct: 360 VGRSMAVIFIEQKPTTTYTKQVVDGVEKDVAVQTFKEEKKIISLATIQSPLGSQFRITGL 419

Query: 415 DSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLYMLVY 474
           +   E++ELALLLRAG LAAPMYF +ERTIGPSLG  NI  G+ +   G   V L+++  
Sbjct: 420 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI 479

Query: 475 YRGFGVVANIALTLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEEL 534
           YR FG++A +AL +N++LL+A MS+L ATLTLPGIAGIVLT+GMAVDANVLIF RI+EE+
Sbjct: 480 YRFFGIIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI 539

Query: 535 KSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMFS 594
            +G+  Q AIN G+ RAF +I D+N+TTLLV  ILFAMG+GPVKGFAVT+ +GI TSMF+
Sbjct: 540 AAGMTIQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT 599

Query: 595 GLMVSRSIVNIVYGGRRVEKLSI 617
            +MV+R++VN+++GGR  +KL I
Sbjct: 600 AIMVTRAMVNLIFGGRDFKKLWI 622