Pairwise Alignments

Query, 624 a.a., preprotein translocase subunit SecD from Marinobacter adhaerens HP15

Subject, 616 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  578 bits (1491), Expect = e-169
 Identities = 311/626 (49%), Positives = 453/626 (72%), Gaps = 19/626 (3%)

Query: 1   MLNKYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAGVLDRAVGVLES 60
           MLNKYP+WKN+++++ + IG  YA+PNLF +D+A+Q+   R + EV A    R   +L S
Sbjct: 1   MLNKYPMWKNIMVVLIIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAS 59

Query: 61  RGIEVKSSTLQDRDALIRLTNSEDQLQARPLVQAALGNEYLVALNMAASTPGWLKSLGAG 120
           +GI VK S L+    L+R+ N++ QL A+ ++  ALG+++ VALN+A +TP WL+S+G  
Sbjct: 60  KGIAVKRSELEKGQLLVRVQNADQQLLAKEVIAEALGDKFTVALNLAPATPKWLESMGGS 119

Query: 121 PMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRGGDVQDNREIVLS 180
           PMKLGLDLRGGVHFL+EVDM  A+ +  +A     + +LREE+IRY G  + + + I + 
Sbjct: 120 PMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRI-NAQGIEIK 178

Query: 181 FRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTLSEAEVTAIQDYALEQNLTTIRN 240
           FRD  S   A   ++ + N+ +  + ++G++F L   +SE  +  +++ AL+QN+TTIRN
Sbjct: 179 FRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQVKEEALQQNITTIRN 238

Query: 241 RVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLGATANLEFRM-EARQDAPSSE-- 297
           RVNELGV+EP+VQ+QGA+RIIVELPGVQDTA+AK +LGATA++EF M + + DA +++  
Sbjct: 239 RVNELGVSEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADANAAQAG 298

Query: 298 -----TEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMN 352
                +E +  R+  Q    L++EV+ TG+++  AQ +FD+  +PQV+I +D+ GG + +
Sbjct: 299 RVPAGSEVYQRREGGQVV--LKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFS 356

Query: 353 RATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGIISLATVQSALGSSFRIT 412
             T++ IG+ MA LFIEY+   E R  DG  + ++   +E+ +IS+AT+Q+ LG +F IT
Sbjct: 357 NVTKDNIGKPMATLFIEYKDSGE-RNADGSVKMLK---IEE-VISVATIQARLGRNFVIT 411

Query: 413 GLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLYML 472
           GL S  EA  LALLLRAGAL AP+  V+ERTIGPSLG +NI +G+ ++    G V+L+ML
Sbjct: 412 GL-SHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIASGINAMLWSMGAVVLFML 470

Query: 473 VYYRGFGVVANIALTLNLMLLVACMSIL-SATLTLPGIAGIVLTVGMAVDANVLIFERIK 531
           +YYR FG++ANIALT+NL+++V  MS++  A LTLPGIAG+VLT+GMAVD NVLI+ERI+
Sbjct: 471 IYYRAFGLIANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLTIGMAVDGNVLIYERIR 530

Query: 532 EELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTS 591
           +E+++G   Q AI  GY+ AF SI D+NITT + A+ILFA+GSG VKGFAVTL IGI TS
Sbjct: 531 DEIRAGRSVQQAIQEGYANAFSSIADSNITTFITALILFAVGSGAVKGFAVTLMIGIATS 590

Query: 592 MFSGLMVSRSIVNIVYGGRRVEKLSI 617
           MF+ ++ +R+IVN V+GG+R++ LSI
Sbjct: 591 MFTAIVGTRAIVNAVWGGKRIQTLSI 616