Pairwise Alignments
Query, 624 a.a., preprotein translocase subunit SecD from Marinobacter adhaerens HP15
Subject, 616 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 578 bits (1491), Expect = e-169 Identities = 311/626 (49%), Positives = 453/626 (72%), Gaps = 19/626 (3%) Query: 1 MLNKYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAGVLDRAVGVLES 60 MLNKYP+WKN+++++ + IG YA+PNLF +D+A+Q+ R + EV A R +L S Sbjct: 1 MLNKYPMWKNIMVVLIIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAS 59 Query: 61 RGIEVKSSTLQDRDALIRLTNSEDQLQARPLVQAALGNEYLVALNMAASTPGWLKSLGAG 120 +GI VK S L+ L+R+ N++ QL A+ ++ ALG+++ VALN+A +TP WL+S+G Sbjct: 60 KGIAVKRSELEKGQLLVRVQNADQQLLAKEVIAEALGDKFTVALNLAPATPKWLESMGGS 119 Query: 121 PMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRGGDVQDNREIVLS 180 PMKLGLDLRGGVHFL+EVDM A+ + +A + +LREE+IRY G + + + I + Sbjct: 120 PMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRI-NAQGIEIK 178 Query: 181 FRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTLSEAEVTAIQDYALEQNLTTIRN 240 FRD S A ++ + N+ + + ++G++F L +SE + +++ AL+QN+TTIRN Sbjct: 179 FRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQVKEEALQQNITTIRN 238 Query: 241 RVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLGATANLEFRM-EARQDAPSSE-- 297 RVNELGV+EP+VQ+QGA+RIIVELPGVQDTA+AK +LGATA++EF M + + DA +++ Sbjct: 239 RVNELGVSEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADANAAQAG 298 Query: 298 -----TEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMN 352 +E + R+ Q L++EV+ TG+++ AQ +FD+ +PQV+I +D+ GG + + Sbjct: 299 RVPAGSEVYQRREGGQVV--LKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFS 356 Query: 353 RATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGIISLATVQSALGSSFRIT 412 T++ IG+ MA LFIEY+ E R DG + ++ +E+ +IS+AT+Q+ LG +F IT Sbjct: 357 NVTKDNIGKPMATLFIEYKDSGE-RNADGSVKMLK---IEE-VISVATIQARLGRNFVIT 411 Query: 413 GLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLYML 472 GL S EA LALLLRAGAL AP+ V+ERTIGPSLG +NI +G+ ++ G V+L+ML Sbjct: 412 GL-SHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIASGINAMLWSMGAVVLFML 470 Query: 473 VYYRGFGVVANIALTLNLMLLVACMSIL-SATLTLPGIAGIVLTVGMAVDANVLIFERIK 531 +YYR FG++ANIALT+NL+++V MS++ A LTLPGIAG+VLT+GMAVD NVLI+ERI+ Sbjct: 471 IYYRAFGLIANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLTIGMAVDGNVLIYERIR 530 Query: 532 EELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTS 591 +E+++G Q AI GY+ AF SI D+NITT + A+ILFA+GSG VKGFAVTL IGI TS Sbjct: 531 DEIRAGRSVQQAIQEGYANAFSSIADSNITTFITALILFAVGSGAVKGFAVTLMIGIATS 590 Query: 592 MFSGLMVSRSIVNIVYGGRRVEKLSI 617 MF+ ++ +R+IVN V+GG+R++ LSI Sbjct: 591 MFTAIVGTRAIVNAVWGGKRIQTLSI 616