Pairwise Alignments

Query, 624 a.a., preprotein translocase subunit SecD from Marinobacter adhaerens HP15

Subject, 634 a.a., preprotein translocase subunit SecD from Herbaspirillum seropedicae SmR1

 Score =  473 bits (1218), Expect = e-138
 Identities = 266/633 (42%), Positives = 398/633 (62%), Gaps = 38/633 (6%)

Query: 2   LNKYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAGVLDRAVGVLESR 61
           +N+Y LWK  +I++AL+ G IY +PN F +  A+QI+ A+S+ +V   V  R   +L+  
Sbjct: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60

Query: 62  GIEVKSSTLQDRDAL----IRLTNSEDQLQARPLVQAALGNE-----YLVALNMAASTPG 112
            +  +S    +  +      R   ++ Q +A+ L++  L  +     Y+VA N+  +TP 
Sbjct: 61  NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120

Query: 113 WLKSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRGGDVQ 172
           WL+SL A PM LGLDLRGGVHFL++VD++  +++RL  M   ++  LR++ IR+ G   +
Sbjct: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGIS-R 179

Query: 173 DNREIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTLSEAEVTAIQDYALE 232
               I +SFRD  +R +A      +  E LL +   GD+  L+ TL    +   Q+  ++
Sbjct: 180 SGDSIEISFRDADTRNKA-RAALGELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVK 238

Query: 233 QNLTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLGATANLEFRM-EARQ 291
           QN++T+  RVNELGVAEPL+Q+QGADRI+VELPGVQD ++AK ++G TA LE RM +   
Sbjct: 239 QNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESV 298

Query: 292 DAPSSETEEFGFRDQPQRTAR-----LEQEVIATGNNVANAQQAFDENGQPQVNITMDSV 346
              + ET    F  +  +  +     L +E + TG+ ++NA  +FDEN QP V+I ++  
Sbjct: 299 VRGTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGD 358

Query: 347 GGDLMNRATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGIISLATVQSALG 406
           GG  M  ATR+ +G+ MA++  E           GE            ++++AT++S LG
Sbjct: 359 GGRKMREATRDKVGKAMAIVLFEKGK--------GE------------VLTVATIRSELG 398

Query: 407 SSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGL 466
           S F+ITG+ S   A++LALLLRAG+LAAPM  ++ERTIGP LG  NI  G  SV  GF  
Sbjct: 399 SRFQITGMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLA 458

Query: 467 VLLYMLVYYRGFGVVANIALTLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLI 526
           + ++M++YY+ FG  + +AL++N++LLVA +S L  TLTLPGIA I L +GMA+D+NVLI
Sbjct: 459 MAIFMVIYYQLFGFFSALALSVNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLI 518

Query: 527 FERIKEELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCI 586
            ERI+EEL++G  PQ AI +G+ RA+ +I D+N+TTL+  + L   GSG ++GFAV  C+
Sbjct: 519 NERIREELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCL 578

Query: 587 GILTSMFSGLMVSRSIVNIVYG-GRRVEKLSIG 618
           GILTSMFS +  SR +VN+ YG  +R+  L+IG
Sbjct: 579 GILTSMFSAVFFSRGVVNLWYGRKKRLSSLAIG 611