Pairwise Alignments

Query, 624 a.a., preprotein translocase subunit SecD from Marinobacter adhaerens HP15

Subject, 532 a.a., protein translocase subunit secD from Caulobacter crescentus NA1000

 Score =  287 bits (735), Expect = 7e-82
 Identities = 188/526 (35%), Positives = 290/526 (55%), Gaps = 45/526 (8%)

Query: 109 STPGWLKSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRG 168
           S P WL       + LGLDL+GG + + EVD +    +RL  +   ++  LR E+I + G
Sbjct: 35  SFPDWLPKQ---KLNLGLDLQGGSYLMYEVDTDALRKERLKNLVEDVRTVLRGEQITF-G 90

Query: 169 GDVQDNREIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFL-----LVLTLSEAEV 223
              + N  + L   D A   EA N++R           +  D  +       L LS    
Sbjct: 91  ELAEVNGTVRLRIADAAKVDEAANLLRRSVGSPFAGSISGRDVSVDKRDDQRLELSFIPE 150

Query: 224 TAIQD--YALEQNLTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLGATA 281
            A QD   A++Q++ TIR R++ LG  EP + +QGADRI+++  G  D  + K V+G TA
Sbjct: 151 AAAQDASMAVDQSIETIRRRIDTLGTKEPNITRQGADRIVIQAAGESDPERLKAVVGKTA 210

Query: 282 NLEFRMEARQDAPSS--------ETEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDE 333
            L F+M      P           +E     D+ Q    + +  + +G+ + +++Q+FD+
Sbjct: 211 KLTFQMVDDSVTPEDIAAGRIPPGSEALPSDDRYQAAYVVRKRALVSGDELVDSRQSFDD 270

Query: 334 NGQPQVNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEK 393
            G P V+   +  G      AT   +G+R A++            +DG            
Sbjct: 271 RGAPAVSFKFNGSGSRKFGDATARNVGKRFAIV------------LDGR----------- 307

Query: 394 GIISLATVQSA-LGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKN 452
            IIS  T+  A LG S  ITG  +   A++LALLLR+GAL AP+   Q+ T+G  LG   
Sbjct: 308 -IISAPTINGAILGGSGIITGSFTAESASDLALLLRSGALPAPLKVEQQNTVGAELGADA 366

Query: 453 IDAGMMSVALGFGLVLLYMLVYYRG-FGVVANIALTLNLMLLVACMSILSATLTLPGIAG 511
           + AG +S  + F  ++++M++ Y   FG ++ IAL +N ML+VA MS+  ATLTLPGIAG
Sbjct: 367 VRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAMSLTQATLTLPGIAG 426

Query: 512 IVLTVGMAVDANVLIFERIKEELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFA 571
           ++LT+ +AVDANVLI+ER+++E ++G  P  A ++G+SRA  +I DAN+TTL+ A I+FA
Sbjct: 427 LILTLAVAVDANVLIYERMRDEARAGKSPILAADAGFSRAMTTIIDANVTTLVAAGIMFA 486

Query: 572 MGSGPVKGFAVTLCIGILTSMFSGLMVSRSIVNIVYGGRRVEKLSI 617
            G+GPV+GFA TL IG+ TS+F+ ++VS+ ++   +   R +KL I
Sbjct: 487 FGAGPVRGFAWTLSIGVFTSVFTAVLVSQLLIGWWFRAARPKKLPI 532



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 8  WKNLVILVALVIGFIYALPNLFP 30
          WK +++  +++ G ++ LPNL P
Sbjct: 7  WKIVLVTFSVIFGILFTLPNLLP 29