Pairwise Alignments

Query, 166 a.a., sigma-70 family RNA polymerase sigma factor from Pantoea sp. MT58

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 76.6 bits (187), Expect = 2e-19
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 9/159 (5%)

Query: 2   RQHLAEHLTRLWRYGYVLSHNRDMAEELVQSTCVRALERSAQFMPGTRIDRWLFSILHSI 61
           R+ L      L R+ Y L+ +R+ A +L+Q T ++AL+   ++MP T    W+++I+ +I
Sbjct: 7   RKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIMRNI 66

Query: 62  WVSDLRARKVRQGQGFVD-PDAL----LAADNHATSDDNRHFQRIMQH-VNALPEAQRNA 115
           ++++   RKV + Q FVD  D L    L  D    S +  +  + M   VN+LP+  R  
Sbjct: 67  FINNY--RKVVRDQTFVDRTDNLYHLNLPQDTGFESTEKAYDLKEMHRVVNSLPKEYR-V 123

Query: 116 LFLVYVEGLTYQEAAETLAVPVGTIMSRLAAARATLARQ 154
            F ++V G  Y+E AE L +P+GTI SR+   R  L  +
Sbjct: 124 PFAMHVSGFKYREIAEKLNLPLGTIKSRIFFTRQKLQEE 162