Pairwise Alignments

Query, 166 a.a., sigma-70 family RNA polymerase sigma factor from Pantoea sp. MT58

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 76.6 bits (187), Expect = 2e-19
 Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 9/149 (6%)

Query: 12  LWRYGYVLSHNRDMAEELVQSTCVRALERSAQFMPGTRIDRWLFSILHSIWVSDLRARKV 71
           L R+ Y L+ NR+ A +L+Q T ++AL+   +++P T    W+++I+ +I++++   RK+
Sbjct: 17  LLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMYTIMRNIFINNY--RKI 74

Query: 72  RQGQGFVD-PDAL----LAADNHATSDDNRHFQRIMQH-VNALPEAQRNALFLVYVEGLT 125
            + Q FVD  D L    L  D+   S +  +  + M   VNALP+ +    F ++V G  
Sbjct: 75  VRDQTFVDQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPK-EYKVPFSMHVSGFK 133

Query: 126 YQEAAETLAVPVGTIMSRLAAARATLARQ 154
           Y+E AE L +P+GT+ SR+   R  L ++
Sbjct: 134 YREIAEKLDLPLGTVKSRIFFTRQRLQQE 162