Pairwise Alignments

Query, 184 a.a., sigma-70 family RNA polymerase sigma factor from Pantoea sp. MT58

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 9   QQWPALMARAQAGDRAAYNQLLKAMVPAIRALVCKKIRDEVLVEDVIQETLLAIHRVRHT 68
           Q+W   M + ++ D  A+  +     P ++  V K +  E +  +++QET+  + +    
Sbjct: 12  QEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASL 71

Query: 69  YDPQRPILP-WVAAIASARTIDTLR-QHGRRQEVQDEEALQKR---PAESSELQSDNDIL 123
           +D Q+  L  W+  IA   + D LR Q GR   V  ++   +    P        + D+L
Sbjct: 72  FDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLL 131

Query: 124 SG----YLDILPLRQREIVESVHLREQSLAQAAAETHQSLSAVKSLLHRAMVNLR 174
                 +LD LP  Q++++++V+L E      A      L  VKS L  A+  LR
Sbjct: 132 KEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186