Pairwise Alignments

Query, 184 a.a., sigma-70 family RNA polymerase sigma factor from Pantoea sp. MT58

Subject, 186 a.a., RNA polymerase sigma factor from Cupriavidus basilensis FW507-4G11

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 1   MSETDPRAQQWPALMARAQAGDRAAYNQLLKAMVPAIRALVCKKIRDEVLVEDVIQETLL 60
           MS+TDP      AL+AR    D AA  +++   +P + AL  + + D    +DV QE  +
Sbjct: 1   MSDTDPD----DALLARIGRHDAAAVREMVARKLPRVLALATRMLGDSGEAQDVAQEVFM 56

Query: 61  AIHRVRHTYDPQRPILP-WVAAIASARTIDTLRQHGRRQE----VQDEEALQKRPAESSE 115
            + +    + P R     W+  +A     D LR  G R++    V ++ A    P E+ +
Sbjct: 57  RLWKHAARWQPGRARFDTWLHRVALNLCYDRLR--GAREQAMEPVPEQAAPGAGPEEALD 114

Query: 116 LQSDNDILSGYLDILPLRQREIVESVHLREQSLAQAAAETHQSLSAVKSLLHRAMVNLR 174
             +    +   L  LP RQRE +   + +E    +AAA    S+ A++SLL RA  NLR
Sbjct: 115 AAAQGARVGAALAKLPARQREALVLQYYQELPNGEAAALMGISIEALESLLARARRNLR 173