Pairwise Alignments

Query, 309 a.a., RepB family plasmid replication initiator protein from Pantoea sp. MT58

Subject, 293 a.a., replication protein RepA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  195 bits (495), Expect = 1e-54
 Identities = 107/289 (37%), Positives = 166/289 (57%), Gaps = 7/289 (2%)

Query: 5   DNENKALLEPFLSVTKNSGEVIQLHPNKNNTVQPVALMRLGLFVPTLKSTARGKSGAMAS 64
           D    ALL   ++   NSG+++ +  +   +VQP  L+R G+F P  + T    +  + +
Sbjct: 2   DRSENALLPIPVTENLNSGKLLTI--SSTTSVQPNVLLRTGVFTPVGRRT---NANDVKA 56

Query: 65  TDATKELKNLTLVKAEGYEKITITGARLDMDNDFKTWAGIIQSFSRYPTKGDTVTLPFID 124
            D + +L NL + + EGY+ +T+ G RL+++ DFK W GI+  FS+Y    +TV L F +
Sbjct: 57  QDLSNDLVNLDVCQKEGYDLVTVRGQRLNIETDFKVWCGIVLVFSKYGYSSNTVKLTFSE 116

Query: 125 FVKMCGIPSANSSAALRKRLDASLRRIATNTLSF--EGNGKAYHTHLVQSAYYDREKDIV 182
           F K C  PS      LRK++  SL RI + +LSF  + + KA HT ++  A YD E+DIV
Sbjct: 117 FAKFCSYPSRRFDKNLRKQIGDSLGRIQSQSLSFRRKNSEKAVHTGMLLRAMYDGEEDIV 176

Query: 183 RIQADPKLFELYNFDHKVLLQLRAISRLKRKESAQALYTFLESLPTNPAPISLARLRMRL 242
            + AD  L++LY  D++VL+ LR + +L R E AQ LY +  SLP NP P+S  RLR RL
Sbjct: 177 ELMADETLWDLYRLDYQVLVSLRVLEKLPRAEVAQCLYLYFTSLPENPHPVSFERLRERL 236

Query: 243 NLGSKTTTQNHVVRRAMEQLKEIGYLDYSEVKRGRSVFFIIHSRTPKLD 291
            L +     N  ++  +++L+ IGYL  S   +    +++I  R  KL+
Sbjct: 237 RLETSKKEANRKIKTGIQKLESIGYLSGSFAVKNGEQYYLIDQRYKKLE 285