Pairwise Alignments

Query, 884 a.a., type VI secretion system ATPase TssH from Pantoea sp. MT58

Subject, 862 a.a., endopeptidase Clp ATP-binding chain B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  570 bits (1468), Expect = e-166
 Identities = 335/877 (38%), Positives = 518/877 (59%), Gaps = 78/877 (8%)

Query: 18  AMEGAASLCQTRAHAEILPEHWLLKLLEQGEGDLTVLARRYEWDMDAIWQDLLGWLDRQP 77
           A++ A +L Q+R    I P H L  +++ GE     + ++   +   +   +   ++  P
Sbjct: 13  AVQEAVNLVQSRGQQAIEPAHILHGVMKVGENVTNFIFQKLGMNGQQVALVVDKQIESLP 72

Query: 78  RSVRHRPQLSDAIQTLLQEAWLIASLNGEGQIRSQHLLMALVEKQNLVRCDGLWPLLTLG 137
           +     P LS     +LQ+A   +   G+  +  +H+L+AL+  ++ V       L   G
Sbjct: 73  KVSGGEPYLSRESNEVLQKATQYSKEMGDEFVSLEHILLALLTVKSTVSTI----LKDAG 128

Query: 138 QSQLERLRPLLDAQSDERPEVQYEEQLAQNHGGDVEFTGRPVGAEQKEGELNPALQNALD 197
            ++ E    + + +  E+   Q  E   Q+                            L+
Sbjct: 129 MTEKELRNAINELRKGEKVTSQSSEDNYQS----------------------------LE 160

Query: 198 KFTLDVTAKAKEGKIDPVFGRGTEIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLALR 257
           K+ +++   A+ GK+DPV GR  EIR+++ ILSRR KNNPIL+GEPG GKTA+VEGLA R
Sbjct: 161 KYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAHR 220

Query: 258 IAEGNVPESLKPVILHALDLGLLQAGAGVKGEFEQRLKNVIDAVQQSPTPILLFIDEAHT 317
           I  G+VPE+LK   +++LD+G L AGA  KGEFE+RLK+V++ V++S   I+LFIDE HT
Sbjct: 221 ILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKSVVNEVKKSEGDIILFIDEIHT 280

Query: 318 IIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFEKDAALERRFQMVKVDEPD 377
           ++GAG   G  DAAN+LKPALARGELR+I ATT  EY++YFEKD ALERRFQ+V+VDEPD
Sbjct: 281 LVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKALERRFQIVQVDEPD 340

Query: 378 DDTACLMLRGLKSRYAEHHNVHITDDAVKAAVTLSRRYLTGRQLPDKAIDLLDTAAARVR 437
             +   +LRGLK RY  HH+V I DDA+ AAV LS RY+T R LPDKAIDL+D AAA++R
Sbjct: 341 TLSTISILRGLKERYENHHHVRIKDDAIIAAVELSSRYITDRFLPDKAIDLMDEAAAKLR 400

Query: 438 MSLDTVPEQIVRLKARLTALALEEQALLDDIAAGSNRHGD--RLGVIEQLRTELDVRIGE 495
           M +D+VPE++  +  ++  L +E +A+         R  D  +L +I +   EL      
Sbjct: 401 MEVDSVPEELDEISRKIKQLEIEREAI--------KRENDKPKLEIIGKELAELKEVEKS 452

Query: 496 QEARFSSEKALAQQLIAGRQDISN---------------------QANISGLQQQLEQAQ 534
            +A++ SEK L  ++   + +I N                        +  L +++E  Q
Sbjct: 453 FKAKWQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVAEIRYGKLQALDKEIEDTQ 512

Query: 535 ------QGD-VLVQVDVDTRTVANVIADWTGVPLSSLMKDEQAGLLTLENEMGRRVVGQD 587
                 QGD  +++ +VD   +A+V++ WTG+P+S +M+ E+  LL LE+E+ +RV+GQD
Sbjct: 513 EKLRGMQGDKAMIKEEVDAEDIADVVSRWTGIPVSKMMQSEKDKLLHLEDELHQRVIGQD 572

Query: 588 APLHAIAQRLRAAKTGLTSENGPQGVFLLVGPSGVGKTETALALADVLYGGEKSLITINL 647
             + A+A  +R ++ GL     P G F+ +G +GVGKTE A ALA+ L+  E  +  I++
Sbjct: 573 EAIEAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEFLFDDESMMTRIDM 632

Query: 648 SEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVILLDEVEKAHHDVMNLFYQVF 707
           SEYQE H+VS+L G+PPGYVGY +GG LTEA+R++PYSV+L DE+EKAH DV N+  QV 
Sbjct: 633 SEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVL 692

Query: 708 DRGFMRDGEGREIDFRNTVILMTSNLGSDPLMQLLDE-----QPEATEGDLQELLHPILR 762
           D G + D +GR ++F+NT+I+MTSN+GS  +   +++     + E  E   +E+++ +L+
Sbjct: 693 DDGRLTDNKGRVVNFKNTIIIMTSNMGSSYIQSQMEKLSGSNKEEVIEETKKEVMN-MLK 751

Query: 763 DHFQPALLARF-QTVIYRPLAEAAMRTIAEMKLSQVSRRLHRHYGLTTQIDESLYGALTA 821
            + +P  L R  +T+++ PL E  +R I  +++  V + L  + G+  ++ ++    L+ 
Sbjct: 752 KNIRPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAEN-GVELEMTDAALNFLSQ 810

Query: 822 ACLLPDTGARNVDSLLNQQILPVLSQQLLTYMAARQK 858
               P+ GAR V   + + +L  LS++LL+    R K
Sbjct: 811 VGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEVDRSK 847